Many in the community are using the Bioneer deletion sets. Inevitably with such a large resource, there will be issues or ambiguities. Have you found any errors or identified problems with the Bioneer libraries? Check the table for strains of interest, and fill in the form if you’ve found something worth noting. WE’ll collate the data here and publish it regularly. We’ll also try to provide information from Bioneer about resolution of any issues.
Bioneer Library Report
| SPAC number | gene name | the problem | Library version | Reported by | Resolution |
|---|---|---|---|---|---|
| SPAC15E1.03 | rpl42 | Not deleted | 2 | Henry Levin | |
| SPAC16C9.05 | cph1 | Not deleted | 2 | Henry Levin | |
| SPAC1805.06c | hem2 | Not deleted | 2 | Henry Levin | |
| SPAC186.03 | Not deleted | 2 | Henry Levin | ||
| SPAC18G6.02c | chp1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC1F7.01c | spt6 | Not deleted | 2 | Henry Levin | |
| SPAC20G8.09c | Not deleted | 2 | Henry Levin | ||
| SPAC222.04c | ies6 | Not deleted | 2 | Henry Levin | |
| SPAC222.12c | atp2 | Not deleted | 2 | Henry Levin | |
| SPAC222.12c | atp2 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC22F8.11 | plc1 | Not deleted | 2 | Henry Levin | |
| SPAC23C4.09c | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPAC23C4.11 | atp18 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC31G5.07 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPAC3G9.08 | png1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC4A8.03c | ptc4 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC4F8.03 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPAC56F8.04c | coq2 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC589.11 | mug82 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC637.07 | moe1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC644.07 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPAC664.13 | Not deleted | 2 | Henry Levin | ||
| SPAC6C3.04 | cit1 | Not deleted | 2 | Henry Levin | |
| SPAC6F6.03c | Not deleted | 2 | Henry Levin | ||
| SPAC824.07 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPAC890.07c | rmt1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC8C9.03 | cgs1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPAC926.09c | fas1 | Not deleted | 2 | Henry Levin | |
| SPAP27G11.10c | nup184 | Not deleted | 2 | Henry Levin | |
| SPBC119.06 | sco1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC13E7.04 | atp16 | Not deleted | 2 | Henry Levin | |
| SPBC146.09c | lsd1 | Not deleted | 2 | Henry Levin | |
| SPBC16C6.02c | vps1302 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC16D10.02 | trm11 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC16H5.03c | fub2 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC17G9.02c | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPBC17G9.09 | tif213 | Not deleted | 2 | Henry Levin | |
| SPBC18E5.04, | rpl1001 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC18H10.02 | lcf1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC19C2.14 | smd3 | Not deleted | 2 | Henry Levin | |
| SPBC19G7.02 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPBC21D10.11c | nfs1 | Not deleted | 2 | Henry Levin | |
| SPBC26H8.12 | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPBC29A3.18 | cyt1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC30D10.13c | pdb1 | Not deleted | 2 | Henry Levin | |
| SPBC32F12.06 | pch1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC36B7.03 | sec63 | Not deleted | 2 | Henry Levin | |
| SPBC405.04c | ypt7 | Not deleted | 2 | Henry Levin | |
| SPBC409.03 | swi5 | Not deleted | 2 | Henry Levin | |
| SPBC409.07c | wis1 | Not deleted | 2 | Henry Levin | |
| SPBC530.01 | gyp1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPBC577.06c | Not deleted | 2 | Henry Levin | ||
| SPBP23A10.10 | ppk32 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC162.01c | Not deleted | 2 | Henry Levin | ||
| SPCC1682.16 | rpt4 | Not deleted | 2 | Henry Levin | |
| SPCC1840.02c | bgs4 | Not deleted | 2 | Henry Levin | |
| SPCC1919.03c | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPCC1919.09 | tif6 | Not deleted | 2 | Henry Levin | |
| SPCC285.09c | cgs2 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC297.03 | ssp1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC306.04c | set1 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC31H12.08c | ccr4 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC4B3.12 | set9 | Not deleted | 2 | Henry Levin | |
| SPCC553.08c | Could not be revived | Henry Levin | Replaced by Bioneer | ||
| SPCC63.02c, | aah3 | Could not be revived | Henry Levin | Replaced by Bioneer | |
| SPCC663.01c | ekc1 | Not deleted | 2 | Henry Levin |