Below you will find a chronological list of lab publications with the most recent listed first. Please click on the “pdf” link after each individual reference to open the publication in a new tab in your browser window.
2023 |
| Caron, D.A., A.A.Y. Lie, T. Buckowski, J. Turner, K. Frabotta. 2023. The effect of pH and salinity on the toxicity and growth of the Golden Alga, Prymnesium parvum. Protist. 174. https://doi.org/10.1016/j.protis.2022.125927. pdf |
| Mitra, A., D.A. Caron, E. Faurec, K.J. Flynn, S. Gonçalves Leles, P.J. Hansen, G.B. McManus, F. Not, H. do Rosario Gomesi, L. Santoferrara, D.K. Stoeck and U. Tillmann. 2023. The Mixoplankton Database – diversity of photo-phago-trophic plankton in form, function and distribution across the global ocean. Journal of Eukaryotic Microbiology. https://doi.org/10.1111/jeu.12972. pdf |
| Sandoval-Belmar, M. J. Smith, A.R. Moreno, C. Anderson, R.M. Kudela, M. Sutula, F. Kessouri, D.A. Caron, F.P. Chavez, D. Bianchi. 2023. A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia harmful algal blooms along the California coast. Harmful Algae. 126: 102435. DOI: https://doi.org/10.1016/j.hal.2023.102435. pdf |
| Kenitz, K.M., E.C. Orenstein, C.R. Anderson, A.J. Barth, C. Briseño-Avena, D.A. Caron, M.L. Carter, E. Eggleston, P.J.S. Franks, J.T. Fumo, J.S. Jaffe, K.A. McBeain, A. Odell, K. Seech, R. Shipe, J. Smith, D.A.A. Taniguchi, E.L. Venrick, A.D. Barton. 2023. Convening expert taxonomists to build image libraries for training automated classifiers. Limnology and Oceanography Bulletin. 32: 89-97. DOI: https://doi.org/10.1002/lob.10584. pdf |
| Smith, J., E. Eggleston, M.D.A. Howard, S. Ryan, J. Gichuki, K. Kennedy, A. Tyler, M. Beck, S. Huie, and D.A. Caron. 2023. Historic and recent trends of cyanobacterial harmful algal blooms and environmental conditions in Clear Lake, California: a 70-year perspective. Submitted to Review in Elementa, Ecology and Earth Systems. DOI: 10.1525/elementa.2022.00115. pdf |
| Ollison, G.A., S.K. Hu, J.V. Hopper, B.P. Stewart, J.L. Beatty and D.A. Caron. 2023. Physiology governing diatom vs. dinoflagellate bloom and decline in coastal Santa Monica Bay. Frontiers in Microbiology. DOI: 10.3389/fmicb.2023.1287326. |
2022 |
| Follett, C.L., S. Dutkiewicza, Ribalet, F. Zakem, E., D. Caron, E.V. Armbrust and M.J. Follows. 2022. Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus. Proceedings of the National Academy of Science. 119: e2110993118. DOI: https://doi.org/10.1073/pnas.2110993118. pdf |
| Zehr, J.P. and D.A. Caron. 2022. Symbiosis in the ocean microbiome. In: Stahl, L.J. and M.S. Cretoiu (eds.). The marine microbiome, 2nd Edition, Springer Nature, Switzerland. pp. 535-577. pdf |
| Gleich, S.J., J.A. Cram, J.L. Weissman and D.A. Caron. 2022. NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data. ISME Communications. DOI: https://doi.org/10.1038/s43705-022-00106-7. pdf |
| Ollison, G., J. Hopper, S. Hu, B. Stewart, J. Smith, Jayme, J. Beatty, L. Rink and D.A. Caron. 2022. Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight). Environmental Microbiology. DOI: 10.1111/1462-2920.16137. pdf |
| Rayas Fernández, I.M., C.E. Denniston, D.A. Caron and G. Sukhatme. 2022. Informative path planning to estimate quantiles for environmental analysis. IEEE Robotics and Automation Letters. 7(4): 10280-10287. pdf |
| Howard, M.D.A., J.C. Smith, D.A. Caron, R.M. Kudela, K Loftin, K. Hayashi, R. Fadness, S. Fricke, J. Kann, M. Roethler, A. Tatters and S. Theroux. 2022. Integrative monitoring strategy for marine and freshwater Harmful Algal Blooms and toxins across the freshwater-to-marine continuum. Integrated Environmental Assessment and Management. DOI: 10.1002/ieam.4651. pdf |
| Kenkel, C.D., J. Smith, K.A. Hubbard, C. Chadwick; N. Lorenzen, A.O. Tatters and D.A. Caron. 2022. Reduced representation sequencing accurately quantifies relative abundance and reveals population-level variation in Pseudo-nitzschia spp. Harmful Algae. 118: DOI: 10.1016/j.hal.2022.102314. pdf |
2021 |
| Salhotra, G., C.E. Denniston, D.A. Caron, and G.S. Sukhatme. 2021. Adaptive sampling using POMDPs with domain-specific considerations. IEEE International Conference on Robotics and Automation (ICRA): 2385–2391, 2021. pdf |
| Smith, J., D. Shultz, M.D.A. Howard, G. Robertson, V. Phonsiri, V. Renick, D.A. Caron, R.M. Kudela and K. McLaughlin. 2021. Persistent Domoic Acid in Marine Sediments and Benthic Infauna along the Coast of Southern California. Harmful Algae. 108: 102103. DOI: https://doi.org/10.1016/j.hal.2021.102103. pdf |
| Ollison G.A., S.K. Hu, L.Y. Mesrop, E.F. DeLong and D.A. Caron. 2021. Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre. Deep-Sea Res I 170: 103494. doi:https://doi.org/10.1016/j.dsr.2021.103494. pdf |
| Howard M.D.A., R.M. Kudela, K. Hayashi, A.O. Tatters, D.A. Caron, S. Theroux, S. Oehrle, M. Roethler, A. Donovan, K. Loftin and Z. Laughrey. 2021. Multiple co-occurring and persistently detected cyanotoxins and associated cyanobacteria in adjacent California lakes. Toxicon 192: 1-14. doi:https://doi.org/10.1016/j.toxicon.2020.12.019. pdf |
| Coesel S.N., B.P. Durham, R.D. Groussman, S.K. Hu, D.A. Caron, R.L. Morales, F. Ribalet and E.V. Armbrust. 2021. Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities. Proc Nat Acad Sci 118: e2011038118. doi:10.1073/pnas.2011038118. pdf |
| Tatters A.O., J. Smith, R.M. Kudela, K. Hayashi, M.D.A. Howard, A.R. Donovan, K.A. Loftin and DA. Caron. 2021. The tide turns: Episodic and localized cross-contamination of a California coastline with cyanotoxins. Harmful Algae 103: 102003. doi:https://doi.org/10.1016/j.hal.2021.102003. pdf |
2020 |
| Denniston, C.E., A. Kumaraguru, D.A. Caron and G.S. Sukhatme. 2020. Incorporating noise into adaptive sampling. In: Siciliano, B., C. Laschis and K. Oussama (Eds.). 17th International Symposium on Experimental Robotics (ISER 2020), Dec 2020 pp. 198-208. pdf |
| Connell, P.E., F. Ribalet, E.V. Armbrust, A. White and D.A. Caron. 2020. Diel oscillations in feeding strategies of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre. Aquatic Microbial Ecology. 85: 167-181. pdf |
| Stauffer, B.A., G.S. Sukhatme and D.A. Caron. 2020. Physical and biogeochemical factors driving spatially heterogeneous phytoplankton blooms in nearshore waters of Santa Monica Bay, USA. Estuaries and Coasts. DOI: 10.1007/s12237-020-00704-5. pdf |
2019 |
| Smith, J.C., A. Lie, E.L. Seubert, N. Crowley, G. Robertson and D.A. Caron. 2019. Co-occurring dissolved algal toxins observed at multiple monitoring stations off southern California via Solid Phase Adsorption Toxin Tracking (SPATT). Toxicon. 171: 62-65. pdf |
| Boeuf, D., B.R. Edwards, J.M. Eppley, S.K. Hu, K.E. Poff, A.E. Romano, D.A. Caron, D.M. Karl and E.F. DeLong. Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the open ocean. Submitted to Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073/pnas.1903080116 pdf |
| Liu, Z., L.Y. Mesrop, S.K. Hu and D.A. Caron. 2019. Transcriptome of Thalassicolla nucleata holobiont reveals details of a radiolarian symbiotic relationship. Frontiers in Marine Science. DOI: 10.3389/fmars.2019.00284 pdf |
| Tatters, A.O., M.D.A. Howard, C. Nagoda, A.B. Fetscher, R.M. Kudela and D.A. Caron. 2019. Heterogeneity of toxin-producing cyanobacteria and cyanotoxins in coastal watersheds of Southern California. Estuaries and Coasts. DOI: 10.1007/s12237-019-00546-w. pdf |
| Pasulka, A., S.K. Hu, P.D. Countway, K.J. Coye, S.C. Cary, K.B. Heidelberg and D.A. Caron. 2019. SSU-rRNA gene sequencing survey of benthic microbial eukaryotes from Guaymas Basin hydrothermal vent. Journal of Eukaryotic Microbiology. 66: 637-653. pdf |
| Busch, M., D.A. Caron and S. Moorthi. 2019. Growth and grazing control of the dinoflagellate Lingulodinium polyedrum in a natural plankton community. Marine Ecology Progress Series. 611: 45-58. pdf |
| Leles, S.G., A. Mitra, K.J. Flynn, U. Tillmann, D. Stoecker, H.J. Jeong, J. Burkholder, P.J. Hansen, D.A. Caron, P. Glibert, G. Hallefraef, J. Raven, R. Sanders and M. Zubkov. 2019. Sampling bias misrepresents the biogeographic significance of constitutive mixotrophs across global oceans. Global Ecology and Biogeography. DOI: 10.1111/geb.12853. pdf |
2018 |
| Smith, J., P. Connell, R.H. Evans, A.G. Gellene, M.D.A. Howard, B.H. Jones, S. Kaveggia, L. Palmer, A. Schnetzer, B.N. Seegers, E.L. Seubert, A.O. Tatters and D.A. Caron. 2018. A decade and a half of Pseudo-nitzschia spp. and domoic acid along the coast of southern California. Harmful Algae. DOI: https://doi.org/10.1016/j.hal.2018.07.007 pdf |
| Caron D.A. and S.K. Hu. 2018. Are we overestimating protistan diversity in nature? Trends in Microbiology. DOI:https://doi.org/10.1016/j.tim.2018.10.009 pdf |
| Hu, S.K. P.E. Connell, L.Y. Mesrop and D.A. Caron. 2018. A hard day’s night: diel shifts in microbial eukaryotic activity in the north pacific subtropical gyre. Frontiers in Marine Science. DOI: 10.3389/fmars.2018.00351 pdf |
| Connell, P.E., G. Meisterhans, C. Michel, K.R. Arrigo and D.A. Caron. 2018. Phytoplankton and bacterial dynamics in the Chukchi Sea during the spring-summer transition. Marine Ecology Progress Series. 602: 49-62. pdf |
| Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G.J. Doucette, C.M. Mikulski, A.G. Gellene, R.M. Kudela, D.A. Caron, J.M. Birch, C.A. Scholin. 2018. Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: perspectives from targeted and adaptive sampling. Harmful Algae. 78: 129-141. pdf |
| Turk-Kubo, K.A., P. Connell, D.A. Caron, M.E. Hogan, H.M. Farnelid and Jonathan P. J.P. Zehr. 2018. In situ diazotroph population dynamics under different resource ratios in the North Pacific Subtropical Gyre. Frontiers in Microbiology. DOI: 10.3389/fmicb.2018.01616. pdf |
| Medina, F.F., J. Bailey, F. Corsetti, M. Moldowan and D.A. Caron. 2018. Assessing biomarker syngeneity: an in situ approach using monoclonal antibodies to detect squalene. Organic Geochemistry. DOI: https://doi.org/10.1016/j.orggeochem.2018.05.006. pdf |
| Hu, S.K., Z. Liu, H. Alexander, V. Campbell, P.E. Connell, S.T. Dyhrman, K.B. Heidelberg, and D.A. Caron. 2018. Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environmental Microbiology. DOI: https://doi.org/10.1111/1462-2920.14259. pdf |
| Carpenter, K.J., M. Bose, L. Polerecky, A. Lie, K.B. Heidelberg, D.A. Caron. 2018. Single-cell view of carbon and nitrogen acquisition in the mixotrophic alga Prymnesium parvum (Haptophyta) inferred from stable isotope tracers and NanoSIMS. Frontiers in Marine Science (Marine Ecosystem Ecology). 5:157. DOI: 10.3389/fmars.2018.00157. pdf |
| Lie A.A.Y., Z. Liu, R. Terrado, A.O. Tatters, K.B. Heidelberg and D.A. Caron DA. 2018. A tale of two mixotrophic chrysophytes: insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression. PLoS ONE 13(2): e0192439. https://doi.org/10.1371/journal.pone.0192439. pdf |
| Smith, J., A.G. Gellene, K.A. Hubbard, H.A. Bowers, R.M. Kudela, K. Negrey and D.A. Caron. 2018. Pseudo-nitzschia species composition varies concurrently with domoic acid concentrations during two different blooms events in the Southern California Bight. Journal of Plankton Research. 40: 29-45. pdf |
| Tatters, A.O., A. Schnetzer, K. Xu, N. Walworth, F. Fu, J.L. Spackeen, R.E. Sipler, E.M. Bertrand, J.B. McQuaid, A.E. Allen, D.A. Bronk, K. Gao, J. Sun, D.A. Caron and D.A. Hutchins. 2018. Interactive effects of temperature, CO2, and nitrogen source on a coastal California diatom assemblage. Journal of Plankton Research. 40: 151-164. pdf |
| Jones, A.J. K.D. Hambright and D.A. Caron. 2018. Ecological patterns among bacteria and microbial eukaryotes derived from network analyses in a low salinity lake. Microbial Ecology. DOI 10.1007/s00248-017-1087-7. pdf |
2017 |
| Leles, S., A. Mitra, K. Flynn, D. Stoecker, P. Hansen, A. Calbet, G. McManus, R. Sanders, D. Caron, F. Not, G. Hallegraeff, P. Paraskevi, J. Raven, M. Johnson, P. Glibert and S. Våge. 2017. Oceanic protists with different forms of acquired phototrophy display diverse biogeographies and abundance. Proceedings of the Royal Society B. 284: 20170664. DOI: 10.1098/rspb.2017.0664. pdf |
| Stauffer, B.A., A.G. Gellene, D. Rico, C. Sur and D.A. Caron. 2017. Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey. Aquatic Microbial Ecology. 80: 193-207. pdf |
| Wilson, S.T., F.O. Aylward, F. Ribalet, B. Barone, J.R. Casey, P.E. Connell, J.A. Eppley, S. Ferrón, A.E. Romano, K.A. Turk-Kubo, A. Visloval, E.V. Armburst, D.A. Caron, M.J. Church, J.P. Zehr, D.M. Karl and E.F. DeLong. 2017. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera. Nature Microbiology. 2: 17118. pdf |
| Howard, M.D.A., C. Nagoda, R.M. Kudela, K. Hayashi, A. Tatters, D.A. Caron., L. Busse, J. Brown, M.A. Sutula, E.D. Stein. 2017. Microcystin prevalence throughout lentic waterbodies in Coastal Southern California. Toxins. 9: 231. DOI: 10.3390/toxins907023. pdf |
| Terrado, R., A.L. Pasulka, A.A.Y. Lie, V.J. Orphan, K.B. Heidelberg and D.A. Caron. 2017. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis. The ISME Journal. DOI: 10.1038/ismej.2017.68. pdf |
| Berney, C., A. Ciuprina, S. Bender, J. Brodie, V. Edgcomb, E. Kim, J. Rajan, L. Wegener Parfrey, S. Adl, S. Audic, D. Bass, D.A. Caron, G. Cochrane, L. Czech, M. Dunthorn, S. Geisen, F. Oliver Glöckner, F. Mahé, C. Quast, J.Z. Kaye, A.G.B. Simpson, A. Stamatakis, J. del Campo, P. Yilmaz, C. de Vargas. 2017. UniEuk: time to speak a common language in protistology! Journal of Euakryotic Microbiology. 64: 407-411. pdf |
| Lie, A.A.Y., Z. Liu, R. Terrado, A.O. Tatters, K.B. Heidelberg and D.A. Caron. 2017. Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp. BMC Genomics. 18: 163. DOI: 10.1186/s12864-017-3549-1. pdf |
| Seubert, E.L., A.G. Gellene, V. Campbell, J. Smith, G. Robertson and D.A. Caron. 2017. Incubation experiments to determine the response of a natural plankton community to treated sewage effluent. Estuarine, Coastal and Shelf Science. 186: 250-262. pdf |
| Seegers, B., E.N. Teel, R.M. Kudela, D.A. Caron and B.H. Jones. 2017. Glider and remote sensing observations of the upper layer response to an extended shallow coastal diversion of wastewater effluent. Estuarine, Coastal and Shelf Science. 186: 198-208. pdf |
| Connell, P.E., V. Campbell, A.G. Gellene, S.K. Hu and D.A. Caron. 2017. Planktonic food web structure at a coastal time-series site: II. Spatiotemporal variability of microbial trophic activities. Deep-Sea Research I. 121: 210-223. pdf |
| Caron, D.A., P.E. Connell, R.A. Schaffner, A. Schnetzer, J.A. Fuhrman, P.D. Countway and D.Y. Kim. 2017. Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass. Deep-Sea Research I. 121: 14-29. pdf |
| Stoecker, D.K., P.J. Hansen, D.A. Caron and A. Mitra. 2017. Mixotrophy in the marine plankton. Annual Reviews of Marine Sciences. 9: 311-335. pdf |
| Tatters, A.O., M.D.A. Howard, C. Nagoda, L. Busse, A.G. Gellene, D.A. Caron. 2017. Multiple stressors at the land-sea interface: cyanotoxins at the land-sea interface in the Southern California Bight. Toxins. 9(30): 95. DOI: 10.3390/toxins9030095. pdf |
| Caron, D.A. 2017. Acknowledging and incorporating mixed nutrition into aquactic protistan ecology, finally. Environmental Microbiology Reports. 9: 41-43. pdf |
| Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Sukhatme, B. Seegers, B.H. Jones, A.Y. Lie, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel and G. Robertson. 2017. Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science. 186: 223-236. pdf |
| Caron, D.A., R.J. Gast and M.È. Garneau. 2017. Sea ice as a habitat for micrograzers. In: Thomas, D.N. and G.S. Dieckmann (eds.), Sea Ice, Third Edition. John Wiley & Sons, West Sussex, Chapter 15. Pages: 370-393. pdf |
| Liu, Z., S.K. Hu, V. Campbell, A.O. Tatters, K.B. Heidelberg and D.A. Caron. 2017. Single-cell transcriptomics of small microbial eukaryotes: insights and limitations. The ISME Journal. DOI: 10.1038/ismej.2016.190. pdf |
2016 |
| Subbaraya, S., A. Breitenmoser, A. Molchanov, J. Mueller, C. Oberg, D.A. Caron, G. Sukhatme. 2016. Design of Lagrangian drifters for ocean monitoring. IEEE Robotics & Automation Magazine. DOI: 10.1109/MRA.2016.2535154. pdf |
| Caron, D.A., H. Alexander, A.E., J. M. Archibald, E.V. Armbrust, C. Bachy, A. Bharti, C.J. Bell, S.T. Dyhrman, S. Guida, K.B. Heidelberg, J.Z. Kaye, J. Metzner, S.R. Smith and A.Z. Worden. 2016. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology. DOI: 10.1038/nrmicro.2016.160. pdf |
| Hu S.K., V. Campbell, P. Connell, A.G. Gellene, Z. Liu, R.Terrado and D.A. Caron. 2016. Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific. FEMS Microbiol. Ecol. 92(4) DOI: 10.1093/femsec/fiw050. pdf |
| Mitra, A., K.J. Flynn, U. Tillmann, J. Raven, D. Caron, D. Stoecker, F. Not, P. Hansen, G. Hallegraeff, R. Sanders, S. Wilken, G. McManus, M. Johnson, P. Pitta, S. Våge, R. Berje, A. Calbet, F. Thingstad, J.J. Jeong, J. Burkholder, P. Glibert, E. Granéli and V. Lundgren. 2016. Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition; incorporation of diverse mixotrophic strategies. Protist. 167: 106-120. pdf |
| Liu, Z., V. Campbell, K. Heidelberg and D.A. Caron. 2016. Gene expression characterizes different nutritional strategies among three mixotrophic protists. FEMS Microbiology Ecology. 92: fiw106. pdf |
| Martiny, A.C., A. Talarmin, C. Mouginot, J. Lee, J. Huang, A. Gellene and D.A. Caron. 2016. Biogeochemical interactions control a temporal succession in the elemental composition of marine communities. Limnology and Oceanography. 61: 531-542. pdf |
| Caron, D.A. 2016. Mixotrophy stirs up our understanding of marine food webs. Proceedings of the Academy of National Sciences of the U.S. 113 (11): 2806-2808. pdf |
| Caron, D.A. 2016. The rise of Rhizaria. Nature News & Views. DOI: 10.1038/nature17892. pdf |
| Bialonski, S., D.A. Caron, U. Feudel, H. Kantz and S.D. Moorthi. 2016. Phytoplankton dynamics in the Southern California Bight indicate a complex mixture of transport and biology. Marine Ecology Progress Series 38: 1077-1091. pdf |
| Caron, D.A., M. Echt, J. Folsom, E.L. Seubert, A.O. Tatters and A.G. Gellene. 2016. Managing Algal Blooms at a Botanical Garden Lake: A Success Story. North American Lake Management Society (NALMS) Lakeline, Spring. Pages: 17-21. pdf |
2015 |
| Liu, Z., A.C. Jones, V. Campbell, K.D. Hambright, K.B. Heidelberg and D.A. Caron, Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. Frontiers in Microbiology 6 (2015). DOI: 10.3389/fmicb.2015.00319. pdf |
| Seegers, B.N., J.M. Birch, R. Marin III, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Roberston and B.H. Jones. 2015. Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored Environmental Sample Processors, and satellite remote sensing in Southern California. Limnology and Oceanography. 60: 754-764. pdf |
| Hu, S., Z. Liu, A.A. Y. Lie, P.D. Countway, D.Y. Kim, A.C. Jones, R.J. Gast, S.C. Cary, E.B. Sherr, B.F. Sherr and D.A. Caron. 2015. Estimating protistan diversity using highthrough putsequencing. Journal of Eukaryotic Microbiology. 62: 688-693.. pdf |
| Das, J., F. Py, J. Harvey, J. Ryan, A. Gellene, R. Grahamk, D.A. Caron, K. Rajan and G,S. Sukhatme. 2015. Data-driven robotic sampling for marine ecosystem monitoring. International Journal of Robotics Research. DOI: 10.1177/0278364915587723. pdf |
| Liu, Z., A.E. Koid, R. Terrado, V. Campbell, D.A. Caron and K.B. Heidelberg. 2015. Changes in gene expression of Prymnesium parvum due to nitrogen and phosphorus limitation. Frontiers in Microbiology, Aquatic Microbiology. Vol. 6. DOI: 10.3389/fmicb.2015.00631. pdf |
| Fuhrman, J.A. and D.A. Caron. (2015) Heterotrophic planktonic microbes: virus, bacteria, archaea, and protozoa, in Manual of Environmental Microbiology, Fourth Edition, Yates MV, et al., Editors. 2015, American Society of Microbiology. p. 4.2.2-1 – 4.2.2-34. pdf |
2014 |
| Howard, M.D.A., M. Sutula, D.A. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin and A. Sengupta. 2014. Anthropogenic nutrient sources rival natural sources on small scales in the coastal waters of the Southern California Bight. Limnology and Oceanography. 59: 285-297. pdf |
| Chow, C.-E., D.Y. Kim, R. Sachdeva, D.A. Caron and J.A. Fuhrman. 2014. Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. The ISME Journal. 8: 816-829. pdf |
| Keeling, P.J. and 78 others. 2014. The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLOS Biology. 12: e1001889. |
| Koid, A.E., A, Jones, Z. Liu, D.A. Caron and K.B. Heidelberg. 2014. Comparative transcriptomics of four prymnesiophyte algae. PLoS One. 9: e97801. pdf |
| Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans and D.A. Caron. 2014. Development, comparison and validation using ELISAs for the analysis of domoic acid in California sea lion body fluids. Journal of AOAC International. 97: 345-355. pdf |
| Lie, A.A.Y., Z. Liu, S. Hu, A.C. Jones, D.Y. Kim, P.D. Countway, L.A. Amaral-Zettler, R.J. Gast, E.B. Sherr4, B.F. Sherr4, S.C. Cary and D.A. Caron. 2014. Investigating microbial eukaryote diversity: Insights from a comparison of pyrotag and full-length sequences of 18S rDNA from a global survey. Applied and Environmental Microbiology. 80: 4363-4373. pdf |
| Kim, D.Y., P.D. Countway, A.C. Jones, A. Schnetzer, W. Yamashita, C. Tung and D.A. Caron. 2014. Monthly, seasonal and interannual variability of microbial eukaryote assemblages within and below the euphotic zone in the eastern North Pacific. The ISME Journal. 8: 515-530. pdf |
2013 |
| Rose, J.M., E. Fitzpatrick, A. Wang, R.J. Gast and D.A. Caron. 2013. Low temperature constrains growth rates but not instantaneous grazing rates of Antarctic microzooplankton. Polar Biology. 36: 645–659 |
| Caron, D.A. and D.A. Hutchins. 2013. The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps. Journal of Plankton Research. 35: 235-252. pdf |
| Tatters, A. O., A. Schnetzer, F. Fu, A. Y. A. Lie, D. A. Caron, and D. A. Hutchins. 2013. Short- versus long-term responses to changing CO2 in a coastal dinoflagellate bloom: implications for interspecific competitive interactions and community structure. Evolution 67:1879-1891. pdf |
| Tatters, A.O., M.Y. Roleda, A. Schnetzer, F. Fu, C. Hurd, P.W. Boyd, D.A. Caron, A.A.Y. Lie, L.J. Hoffmann and D.A. Hutchins. 2013. Long-term conditioning of a temperate marine diatom community to acidification and warming. Philosophical Transactions of the Royal Society B. 368: 20120437. pdf |
| Coyne, K. J., P. D. Countway, C. A. Pilditch, C. K. Lee, D. A. Caron, and S. C. Cary. 2013. Diversity and Distributional Patterns of Ciliates in Guaymas Basin Hydrothermal Vent Sediments. Journal of Eukaryotic Microbiology. 60: 433-44. pdf |
| Caron, D.A. 2013. Towards a molecular taxonomy for protists: benefits, risks and applications in plankton ecology. Journal of Eukaryotic Microbiology. 60: 407-413. pdf |
| Lie, A.A.Y., D.Y. Kim, A. Schnetzer and D.A. Caron. 2013. Small-scale temporal and spatial variations in protistan community composition at the San Pedro Ocean Time-series station off the coast of southern California. Aquatic Microbial Ecology. 70: 93–110. pdf |
| Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller and D.A. Caron. 2013. Coastal upwelling linked to toxic Pseudo-nitzschia australis blooms in Los Angeles coastal waters, 2005 – 2007. Journal of Plankton Research. 35: 1080-1092. pdf |
| Jones, A.C., T.S. Vivian Liao, F.Z. Najar, B.A. Roe, K.D. Hambright and D.A. Caron. 2013. Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem. Environmental Microbiology. 15: 2557–2572. pdf |
| Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron. 2013. Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA. Environmental Sciences and Pollution Research. 20: 6878–6895. pdf |
2012 |
| Caron, D.A. P.D. Countway, A.C. Jones, D.Y. Kim, A. Schnetzer. Marine Protistan Diversity. 2012. Marine Protistan Diversity. Annual Review of Marine Science 4:467-493. pdf |
| Howard, M.D.A., A.C. Jones, A. Schnetzer, P.D. Countway, C.R. Tomas, R.M. Kudela, K. Hayashi, P. Chia and D.A. Caron. 2012. Quantitative real-time PCR for Cochlodinium fulvescens (Dinophyceae), a potentially harmful dinoflagellate from California coastal waters. Journal of Phycology. 48: 384-393. pdf |
| Lewitus A.J., R.A. Horner, D.A. Caron, E. Garcia-Mendoza, B.M. Hickey, M. Hunter, D.D. Huppert, D. Kelly, R.M. Kudela, G.W. Langlois, J.L. Largier, E.J. Lessard, R. RaLonde, J.E. Rensell, P.G. Strutton, V.L. Trainer, J.F. Tweddle. 2012. Harmful algal blooms in the North American west coast region: history, trends, causes, and impacts. Harmful Algae. 19: 133-159. pdf |
| Stauffer, B.A., A.G. Gellene, A. Schnetzer, E.L. Seubert, C. Oberg, G.S. Sukhatme, D.A. Caron. 2012. An oceanographic, meterological and biological ‘perfect storm’ yields a massive fish kill. Marine Ecology Progress Series. 468: 231-243. pdf |
| Stauffer, B.A., A. Schnetzer, A.G. Gellene, C. Oberg, G.S. Sukhatme, D.A. Caron. 2012. Effects of an acute hypoxia event on microplankton community structure in a coastal harbor of Southern California. Estuaries and Coasts. 36: 135-148. pdf |
| Seubert, E.L., S. Trussell, J. Eagleton, A. Schnetzer, I. Cetinić, P. Lauri, B.H. Jones and D.A. Caron. 2012. Algal toxins and reverse osmosis desalination operations: laboratory bench testing and field monitoring of domoic acid, saxitoxin, brevetoxin and okadaic acid. Water Research. 46: 6563-6573. pdf |
| Kim, D.Y., P.D. Countway, W. Yamashita and D.A. Caron. 2012. A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method. Journal of Microbiological Methods. 91:527-536. pdf |
2011 |
| Schnetzer, A., S.D. Moorthi, P.D. Countway R.J. Gast, I.C. Gilg and D.A. Caron. 2011. Depth matters: microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries. Deep-Sea Research I. 58:16-26. pdf |
| Sun, J. D.A. Hutchins, Y. Feng, E.L. Seubert, D.A. Caron and F.-X. Fu. 2011. Effects of changing pCO2 and phosphate availability on domoic acid production and physiology of the marine harmful bloom diatom Pseudo-nitzschia multiseries. Limnology and Oceanography 56: 829-840. pdf |
| Golubchik, L., D.A. Caron, A. Das, A. Dhariwal, R. Govindan, D. Kempe, C. Oberg, A. Sharma, B. Stauffer, G. Sukhatme, and B. Zhang. 2011. AMBROSia: An overview and recent results. Journal of Algorithms and Computational Technology: 5: 583-599. pdf |
| Kim, D.Y., P.D. Countway, R.J. Gast and D.A. Caron. 2011. Rapid shifts in protistan community structure and composition during bottle incubations. Microbial Ecology. 62: 383-398. pdf |
| Steele, J.A., P.D. Countway, L. Xia, P.D.Vigil, J.M. Beman, D.Y. Kim, C.-E. T. Chow, R. Sachdeva, A.C. Jones, M.S. Schwalbach, J.M. Rose, I. Hewson, A. Patel, F. Sun, D.A. Caron, J.A. Fuhrman. 2011. Marine bacterial, archaeal, and protistan assocation networks reveal ecological linkages. The ISME Journal. 5: 1414-1425. pdf |
| Garneau, M.-È., A. Schnetzer, P.D. Countway, A.C. Jones, E.L. Seubert and D.A. Caron. 2011. Seasonal dynamics of the toxic dinoflagellate Alexandrium catenella at Redondo Beach, California, examined by quantitative PCR. Applied and Environmental Microbiology. 77: 7669–7680. pdf |
2010 |
| Caron, D.A. and R.J. Gast. 2010. Heterotrophic protists associated with sea ice. In: Thomas, D.N. and G.S. Dieckmann (eds.). Sea Ice. Second Edition, Wiley-Blackwell, Oxford, pp. 327-356. |
| Caron, D.A. Garneau, M.-E., E. Seubert, M.D.A. Howard, D. Darjany, A. Schnetzer, I. Cetinic, G. Filteau, P. Lauri, B. Jones and S. Trussell. 2010. Harmful algae and their potential impacts on desalination operations off southern California. Water Research. 44: 385-416. pdf |
| Gilg, I.C., L.A. Amaral-Zettler, P.D. Countway, S. Moorthi, A. Schnetzer and D.A. Caron. 2010. Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the Southern California coast. Protist. 161: 197–211. pdf |
| Countway, P.D., P. Vigil, A. Schnetzer, S. Moorthi and D.A. Caron. 2010. Seasonal Analysis of Protistan Community Structure and Diversity at the USC Microbial Observatory (San Pedro Channel, Pacific Ocean). Limnology and Oceanography. 55: 2381-2396. pdf |
| Fitzpatrick, E., D.A. Caron and A. Schnetzer. 2010. Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia species. Marine Biology. 157: 1161-1169. pdf |
| Smith, R.N., J. Das, H. Heidarsson, A.M. Pereira, F. Arrichiello, I. Cetinic, L. Darjany, M.-E. Garneau, M.D. Howard, C. Oberg, M. Ragan, E. Seubert, E.C. Smith, B.A. Stauffer, A. Schnetzer, G. Toro-Farmer, D.A. Caron B.H. Jones and G.S. Sukhatme. 2010. USC CINAPS builds bridges: observing and monitoring the Southern California Bight. IEEE Robotics and Automation Magazine. 17: 20-30. pdf |
| Smith, R., A. de Menezes Pereira, Y. Chao, P. Li, D.A. Caron, B. Jones, and G. Sukhatme. 2010. Autonomous underwater vehicle trajectory design coupled with predictive ocean models: a case study. IEEE International Conference on Robotics and Automation 2010. pp. 4770-4777. pdf |
| Smith, R., Y. Chao, D.A. Caron, B. Jones, and G. Sukhatme. 2010. Cooperative multi-AUV tracking of phytoplankton blooms based on ocean model predictions. Oceans ’10 – IEEE Sydney, Sydney, Australia. Oceans ’10 – IEEE Sydney. Sydney, Australia. May 2010. pdf |
| Das, J., K. Rajan, S. Frolov, J. Ryan, F. Py, D.A. Caron, and G. Sukhatme. 2010. Towards marine bloom trajectory prediction for AUV mission planning. IEEE International Conference on Robotics and Automation, May 2010. pdf |
| Smith, R., Y. Chao, P. Li, D.A. Caron, B. Jones, and G. Sukhatme. 2010. Planning and implementing trajectories for autonomous underwater vehicles to track evolving ocean processes based on predictions from a regional ocean model. International Journal of Robotics Research. 29: 1475-1497. pdf |
2009 |
| Caron, D. A. (2009). “New accomplishments and approaches for assessing protistan diversity and ecology in natural ecosystems.” BioScience 59: 287-299. pdf |
| Caron, D. A. (2009). “Protistan biogeography: why all the fuss?” Journal of Eukaryotic Microbiology 56: 105-112. pdf |
| Caron, D. A. and P. D. Countway (2009). “Hypotheses on the role of the protistan rare biosphere in a changing world.” Aquatic Microbial Ecology 57: 227-238. pdf |
| Caron, D. A., P. D. Countway, et al. (2009). “Defining DNA-based operational taxonomic units for microbial eukaryote ecology.” Applied and Environmental Microbiology 75: 5797-5808. pdf Download the Microbial Eukaryote Species Assignment (MESA) programs, example files & instructions here: MESA |
| Ishikawa, F.N, B. Stauffer, D.A. Caron and C. Zhoua. 2009. Rapid and label-free cell detection by metal-cluster-decorated carbon nanotube biosensors. Biosensors and Bioelectronics 24: 2967–2972. |
| Caron, D. A. and R. J. Gast (2009). Heterotrophic protists associated with sea icea. Sea Ice. D. N. Thomas and G. S. Dieckmann. Oxford, Wiley-Blackwell: 327-356. |
| Caron, D. A., R. J. Gast, et al. (2009). “Microbial eukaryote diversity and biogeography.” Microbe 4: 71-77. pdf |
| Caron, D. A., A. Z. Worden, et al. (2009). “Protists are microbes too: a perspective.” The ISME Journal 3: 4-12. pdf |
| Gast, R. J., R. W. Sanders, et al. (2009). “Ecological strategies of protists and their symbiotic relationships with prokaryotic microbes.” Trends in Microbiology 17: 563-569. pdf |
| Lonsdale, D. J., R. M. Cerrato, et al. (2009). “Influence of suspension-feeding bivalves on the pelagic food webs of shallow enclosed bays.” Aquatic Biology 6: 263-279. pdf |
| Moorthi, S. D., D. A. Caron, et al. (2009). “Mixotrophy: a widespread and important ecological strategy for planktonic and sea-ice nanoflagellates in the Ross Sea, Antarctica” Aquatic Microbial Ecology 54: 269-277. pdf |
| Pereira, A., H. Heidarsson, H., C. Oberg, D.A. Caron, B. Jones and G.S. Sukhatme. 2009. A communication framework for cost-effective operation of AUVs in coastal regions. The 7th International Conference on Field and Service Robotics (FSR-2009), Cambridge, MA, July 2009. pdf |
| Rose, J. M., N. M. Vora, et al. (2009). “Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist.” The ISME Journal 3: 252-260. pdf |
| Sekula-Wood, E., A. Schnetzer, et al. (2009). “Rapid downward transport of the neurotoxin domoic acid in coastal waters.” Nature Geoscience 2: 272-275. pdf |
| Smith, R. N., Stauffer, B, et al. (2009). “Design and Implementation of Sensor Networks for the Observation and Research of Harmful Algal Blooms in Southern California Coastal Waters.” In Proceedings of the Conference on Coastal Environmental Sensing Networks, Boston, MA, Jul 2009. pdf |
| Smith, R. N., Y. Chao, et al. (2009). “Trajectory Design for Autonomous Underwater Vehicles based on Ocean Model Predictions for Feature Tracking.” In the Proceedings of the International Conference on Field and Service Robotics, Jul 2009. pdf |
| Smith, R. N., J. Das, et al (2009). “Implementation of an Embedded Sensor Network for the Coordination of Slocum Gliders for Coastal Monitoring and Observation.” In the Proceedings of the ACM International Workshop on UnderWater Networks, Berkeley, CA, Nov 2009. pdf |
| Vigil, P., P. D. Countway, et al. (2009). “Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems.” Aquatic Microbial Ecology 54: 83-100. pdf |
2008 |
| Caron, D. A. and R. J. Gast (2008). The diversity of free-living protists: seen and unseen, cultured and uncultured. Accessing uncultivated microorganisms: From the environment to organisms and genomes and back. K. Zengler. Washington, DC, ASM Press: 67-93. |
| Caron, D. A. and J. M. Rose (2008). “The metabolic theory of ecology and algal bloom formation (Reply to comment by López-Urrutia).” Limnology and Oceanography 53: 2048-2049. pdf |
| Caron, D. A., B. A. Stauffer, et al. (2008). “Macro- to fine-scale spatial and temporal distributions and dynamics of phytoplankton and their environmental driving forces in a small subalpine lake in southern California, USA.” Limnology and Oceanography 58: 2333-2349. pdf |
| Rose, J. M., N. M. Vora, et al. (2008). “Effect of temperature and prey type on nutrient regeneration by an Antarctic bacterivorous protist.” Microbial Ecology 56: 101-111. pdf |
| Smith, J. K., D. J. Lonsdale, et al. (2008). “Feeding behavior and development of Acartia tonsa nauplii on the brown tide alga Aureococcus anophagefferens.” Journal of Plankton Research 30: 937-950. pdf |
| Stauffer, B. A., R. A. Schaffner, et al. (2008). “Immunofluorescenceflow cytometry technique for enumeration of the brown-tide alga, Aureococcus anophagefferens.” Applied and Environmental Microbiology 74: 6931-6940. pdf |
2007 |
| Caron, D. A. and A. Schnetzer (2007). Protistan community structure. Manual of environmental microbiology. C. J. Hurst, R. L. Crawford, J. L. Garlandet al. Washington, ASM Press: 454-468. pdf |
| Caron, D.A., A. Das, A. Dhariwal, L. Golubchik, R. Govindan, D. Kempe, C. Oberg, A. Sharma, B. Stauffer, G. Sukhatme, and B. Zhang. 2007. AMBROSia: An Autonomous Model-Based Reactive Observing System. ICCS 2007; Lecture Notes in Computer Science, 4487: 995-1001. |
| Countway, P. D., R. J. Gast, et al. (2007). “Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western N. Atlantic (Sargasso Sea and Gulf Stream).” Environmental Microbiology 9: 1219-1232. pdf |
| Gast, R. J., D. M. Moran, et al. (2007). “Kleptoplasty in an Antarctic dinoflagellate: caught in evolutionary transition?” Environmental Microbiology 9: 39-45. pdf |
| Lonsdale, D. J., R. M. Cerrato, et al. (2007). “Zooplankton changes associated with grazing pressure of northern quahogs (Mercenaria mercenaria L.) in experimental mesocosms.” Estuarine and Coastal Shelf Science 73: 101-110. pdf |
| Moran, D. M., O. R. Anderson, et al. (2007). “A description of seven Antarctic marine Gymnamoebae including a new species and a new genus: Platyamoeba contorta n. sp. and Vermistella antarctica n. gen. n. sp.” Journal of Eukaryotic Microbiology 54: 169-183. pdf |
| Rose, J. M. and D. A. Caron (2007). “Does low temperature constrain the growth rates of heterotrophic protists? Evidence and implications for algal blooms in cold water.” Limnology and Oceanography 52: 886-895. pdf |
| Schnetzer, A., P. E. Miller, et al. (2007). “Blooms of Pseudo-nitzschia and domoic acid in the San Pedro Channel and Los Angeles harbor areas of the Southern California Bight, 2003-2004.” Harmful Algae 6: 372-387. pdf |
| Sherr, B. F., E. B. Sherr, et al. (2007). “A sea of microbes: oceanic protists.” Oceanography 20: 102-106. pdf |
| Singh, A., M. Batalin, et al. (2007). “Human assisted robotic team campaigns for aquatic monitoring.” Journal of Field Robotics 24: 969-989. pdf |
| Sukhatme, G., A. Dhariwal, et al. (2007). “The design and development of a wireless robotic networked aquatic microbial observing system.” Environmental Engineering Science 24: 205-215. pdf |
2006 |
| Countway, P. D. and D. A. Caron (2006). “Abundance and distribution of Ostreococcus sp. in the San Pedro Channel, California (USA) revealed by qPCR.” Applied and Environmental Microbiology 72: 2496-2506. pdf |
| Deonarine, S. N., C. J. Gobler, et al. (2006). “Role of zooplankton in the onset and demise of harmful brown tide blooms (Aureococcus anophagefferens) in US mid-Atlantic estuares.” Aquatic Microbial Ecology 44: 181-195. pdf |
| Gast, R. J., D. M. Moran, et al. (2006). “Abundance of a novel dinoflagellate phylotype in the Ross Sea, Antarctica.” Journal Of Phycology 42: 233-242. pdf |
| Lee, A. S., M. Mahapatro, et al. (2006). “Whole-cell sensing for a harmful bloom-forming microscopic alga by measuring antibody-antigen forces.” IEEE Transactions on Bioscience 5: 149-156. pdf |
| Moorthi, S. D., P. D. Countway, et al. (2006). “Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum.” Microbial Ecology 52: 136-150. pdf |
2005 |
| Caron, D. A. (2005). “Marine microbial ecology in a molecular world: what does the future hold?” Scientia Marina 69(S): 97-110. pdf |
| Countway, P. D., R. J. Gast, et al. (2005). “Protistan diversity estimates based on 18S rDNA from seawater incubations in the western North Atlantic.” Journal of Eukaryotic Microbiology 52(2): 95-106. pdf |
| Dolan, J. R., F. Rassoulzadegan, et al. (2005). “The first decade of ‘Aquatic Microbial Ecology’ (1995-2005): evidence for gradualism or punctuated equilibrium?” Aquatic Microbial Ecology 39: 3-6. pdf |
| Schnetzer, A. and D. A. Caron (2005). “Assessing the impact of copepod grazing on the trophic structure of the microbial assemblage in the San Pedro Channel, California.” Journal of Plankton Research 27: 959-971. pdf |
2004 |
| Caron, D. A., P. D. Countway, et al. (2004). “The growing contributions of molecular biology and immunology to protistan ecology: Molecular signatures as ecological tools.” Journal of Eukaryotic Microbiology 51(1): 38-48. pdf |
| Caron, D. A., C. J. Gobler, et al. (2004). “Microbial herbivory on the brown tide alga, Aureococcus anophagefferens: results from natural ecosystems, mesocosms and laboratory experiments.” Harmful Algae 3(4): 439-457. pdf |
| Cerrato, R. M., D. A. Caron, et al. (2004). “Effect of the northern quahog Mercenaria mercenaria on the development of blooms of the brown tide alga Aureococcus anophagefferens.” Marine Ecology Progress Series 281: 93-108. pdf |
| Gast, R. J., M. R. Dennett, et al. (2004). “Characterization of protistan assemblages in the Ross Sea, Antarctica by denaturing gradient gel electrophoresis.” Applied and Environmental Microbiology 70: 2028-2037. pdf |
| Gastrich, M. D., R. Lathrop, et al. (2004). “Assessment of brown tide blooms, caused by Aureococcus anophagefferens, and contributing factors in New Jersey coastal bays: 2000-2002.” Harmful Algae 3: 305-320. pdf |
| Gobler, C. J., G. E. Boneillo, et al. (2004). “Nutrient limitation, organic matter cycling, and plankton dynamics during an Aureococcus anophagefferens bloom.” Aquatic Microbial Ecology 35: 31-43. pdf |
| Rose, J. M., D. A. Caron, et al. (2004). “Counting heterotrophic nanoplanktonic protists in cultures and in aquatic communities by flow cytometry.” Aquatic Microbial Ecology 34: 263-277. pdf |
2003 |
| Caron, D. A., M. R. Dennett, et al. (2003). “Development and application of a monoclonal-antibody technique for counting Aureococcus anophagefferens, an alga causing recurrent brown tides in the Mid-Atlantic United States.” Applied and Environmental Microbiology 69(9): 5492-5502. pdf |
| Gast, R. J., D. J. Beaudoin, et al. (2003). “Isolation of symbiotically expressed genes from the dinoflagellate symbiont of the solitary radiolarian Thalassicolla nucleata ” Biological Bulletin 204: 210-214. pdf |
| Smith, W. O., Jr., M. R. Dennett, et al. (2003). “The temporal dynamics of the flagellated and colonial stages of Phaeocystis antarctica in the Ross Sea.” Deep-Sea Research 50: 605-617. pdf |
2002 |
| Caron, D. A., P. D. Countway, et al. (2002). Protozoa in marine/estuarine waters. Encyclopedia of environmental microbiology. G. Bitton. New York, John Wiley & Sons, Inc.: 2613-2626. pdf |
| Dennett, M. R., D. A. Caron, et al. (2002). “Video plankton recorder reveals high abundances of colonial Radiolaria in surface waters of the central North Pacific.” Journal of Plankton Research 24(8): 797-805. pdf |
2001 |
| Boissonneault-Cellineri, K. R., M. Mehta, et al. (2001). “Microbial food web interactions in two Long Island embayments.” Aquatic Microbial Ecology 26(2): 139-155. pdf |
| Carlsson, P. and D. A. Caron (2001). “Seasonal variation of phosphorus limitation of bacterial growth in a small lake.” Limnology and Oceanography 46(1): 108-120. pdf |
| Caron, D. A. (2001). Protistan community structure. Manual of Environmental Microbiology. C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach and M. V. Walter. Washington, DC, ASM Press: 378-389. pdf |
| Dennett, M. R., S. Mathot, et al. (2001). “Abundance and distribution of phototrophic and heterotrophic nano- and microplankton in the southern Ross Sea.” Deep-Sea Research Part II-Topical Studies in Oceanography 48(19-20): 4019-4037. pdf |
| Gast, R. J. and D. A. Caron (2001). “Photosymbiotic associations in planktonic foraminifera and radiolaria.” Hydrobiologia 461: 1-7. pdf |
| Lim, E. L., M. R. Dennett, et al. (2001). “Identification of heterotrophic nanoflagellates by restriction fragment length polymorphism analysis of small subunit ribosomal DNA.” Journal of Eukaryotic Microbiology 48(3): 247-257. pdf |
| Sanders, R. W., D. A. Caron, et al. (2001). “Nutrient acquisition and population growth of a mixotrophic alga in axenic and bacterized cultures.” Microbial Ecology 42(4): 513-523. pdf |
2000 |
| Amaral Zettler, L. A. and D. A. Caron (2000). “New insights into the phylogeny of the Acantharea based on SSU rRNA gene sequencing.” European Journal Of Protistology 36(1): 34-39. pdf |
| Caron, D. A., M. R. Dennett, et al. (2000). “Microzooplankton herbivory in the Ross Sea, Antarctica.” Deep-Sea Research 47: 15-16. pdf |
| Caron, D. A. (2000). Protistan herbivory and bacterivory. Marine Microbiology: Methods in Microbiology. J. Paul. San Diego, ACADEMIC PRESS INC. 30: 289-315. pdf |
| Caron, D. A. (2000). Symbiosis and mixotrophy among pelagic microorganisms. Microbial Ecology of the Oceans. D. L. Kirchman. New York, Wiley-Liss, Inc.: 495-523. pdf |
| Caron, D. A., E. L. Lim, et al. (2000). “Responses of bacterioplankton and phytoplankton to organic carbon and inorganic nutrient additions in contrasting oceanic ecosystems.” Aquatic Microbial Ecology 22(2): 175-184. pdf |
| Garrison, D. L., M. M. Gowing, et al. (2000). “Microbial food web structure in the Arabian Sea: a US JGOFS study.” Deep-Sea Research Part Ii-Topical Studies in Oceanography 47(7-8): 1387-1422. pdf |
| Lonsdale, D. J., D. A. Caron, et al. (2000). “Predation by Oithona spp. on protozooplankton in the Ross Sea, Antarctica.” Deep-Sea Research II 47(15-16): 3273-3283. pdf |
| Nigam, R. and D. A. Caron (2000). “Does temperature affect dimorphic reproduction in benthic foraminifera? A culture experiment on Rosalina leei.” Current Science 79(8): 1105-1106. pdf |
| Sanders, R. W., U.-G. Berninger, et al. (2000). “Heterotrophic and mixotrophic nanoplankton predation on picoplankton in the Sargasso Sea and on Georges Bank.” Marine Ecology Progress Series 192: 103-118. pdf |
1999 |
| Amaral Zettler, L. A., O. R. Anderson, et al. (1999). “Towards a molecular phylogeny of colonial spumellarian radiolaria.” Marine Micropaleontology 36: 67-79. pdf |
| Caron, D. A. and M. R. Dennett (1999). “Phytoplankton growth and mortality during the 1995 Northeast Monsoon and Spring Intermonsoon in the Arabian Sea.” Deep-Sea Research 46: 1665-1690. pdf |
| Caron, D. A., E. L. Lim, et al. (1999). “Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas (chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species.” Journal of Phycology 35: 824-837. pdf |
| Caron, D. A., R. J. Gast, et al. (1999). “Protistan community structure: molecular approaches for answering ecological questions.” Hydrobiologia 401: 215-227. pdf |
| Caron, D. A., E. R. Peele, et al. (1999). “Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea south of Bermuda.” Limnology and Oceanography 44(2): 259-272. pdf |
| Dennett, M. R., D. A. Caron, et al. (1999). “Abundance and biomass of nano- and microplankton during the 1995 Northeast Monsoon and Spring Intermonsoon in the Arabian Sea.” Deep-Sea Research 46: 1691-1717. pdf |
| Gast, R. J., T. A. McDonnell, et al. (1999). “srDNA-based taxonomic affinities of algal symbionts from a planktonic foraminifer and a solitary radiolarian.” Journal Of Phycology 36: 172-177. pdf |
| Gifford, D. J. and D. A. Caron (1999). Sampling, preservation, enumeration and biomass of marine protozooplankton. ICES zooplankton methodology manual. London, Academic Press: 193-221. pdf |
| Lim, E. L., D. A. Caron, et al. (1999). “The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment culture.” Limnology and Oceanography 44: 37-51. pdf |