2025
Alas CD, Wu L, Pinaud F, Haselwandter CA. 2025. Diffusion-driven self-assembly of emerin nanodomains at the nuclear envelope. Phys. Rev. Research 7:L012019.
Alves-Lima C, Montecinos G, Escalona M, Calhoun S, Marimuthu M, Nguyen O, Beraut E, Lipzen A, Grigoriev IV, Raimondi P, Nuzhdin S, Alberto F. 2025. The reference genome for the northeastern Pacific bull kelp, Nereocystis luetkeana. :2025.07.16.665147. Available from: https://www.biorxiv.org/content/10.1101/2025.07.16.665147v1
Arnold DB. 2025. Tracing neural circuits in the anterograde direction. Nat Methods 22:910–911.
Bagley SJ, Beaubier N, Balaj L, Bettegowda C, Carpenter E, Carter BS, Corner A, Dittamore R, Grossman RL, Hickman RA, Kuhn P, LeBlang S, Lichtenberg T, Mansouri A, Miller A, Ngo T, Rood BR, Till J, Xu L, Leiman LC. 2025. Minimum Technical Preanalytical, Patient, and Clinical Context Data Elements for Cerebrospinal Fluid Liquid Biopsy: Recommendations for Public Database Submissions. JCO Precis Oncol 9:e2400921.
Bai J, Koos DS, Stepanian K, Stachelek K, Bhat B, Fraser SE, Moats RA, Cobrinik D. 2025. Abstract 3944: Deciphering retinoblastoma indolence-malignancy transition with RB1 knockout cone reporter retinal organoids. Cancer Res 85:3944.
Bareghamyan A, Deng C, Daoudi S, Yadav SC, Lu X, Zhang W, Campbell RE, Kramer RH, Chenoweth DM, Arnold DB. 2025. A toolbox for ablating excitatory and inhibitory synapses.Slutsky I, Huguenard JR, editors. eLife 13:RP103757.
Bell KS, Ko S, Ali S, Bognar B, Khmelkov M, Rau N, Peng OK, Eyuboglu M, Paine J, Tong A, Saria A, Agrawal S, Davies KJA, Tower J. 2025. Tissue-Specific Fluorescent Protein Turnover in Free-Moving Flies. Insects 16:583.
Cai S, Mai J, Hong W, Fraser SE, Cutrale F. 2025. Rapid diffused optical imaging for accurate 3D estimation of subcutaneous tissue features. iScience 28.
Chen S, Phillips CM. 2025. Nuclear Argonaute protein NRDE-3 switches small RNA partners during embryogenesis to mediate temporal-specific gene regulatory activity.Mori MA, Ron D, editors. eLife 13:RP102226.
Cherchia L, Fraser SE, Schneider F, Finley SD. 2025. BPS2025 – A tale of trafficking: On prolactin receptor localization in pancreatic β-cells. Biophysical Journal 124:484a.
Chien E, Belew MD, Michael WM. 2025. Sequential action of the nuclear Argonautes HRDE-1 and NRDE-3 promotes global transcriptional silencing during starvation in the nascent C. elegans germline. bioRxiv:2025.06.25.661390.
Chiolo I, Altmeyer M, Legube G, Mekhail K. 2025. Nuclear and genome dynamics underlying DNA double-strand break repair. Nat Rev Mol Cell Biol 26:538–557.
Clarke CA, Mitchell BL, Alme E, Beer JP, Beer TM, Beidelschies MA, Hoyos J, Klein EA, Kuhn P, Krunic N, Lang K, Lee JSH, Lopez Ramos D, Morgenstern D, Putcha G, Quinn E, Raymond VM, Rubinstein WS, Sanchez SA, Serra RW, Stewart MD, Leiman LC. 2025. Navigating Complexity: Perspectives on Risk Assessment in the Era of New Blood-Based Tests for Early Cancer Detection. Clin Cancer Res 31:2267–2270.
Crisostomo BA, Ferger L, Tabonda-Nabor AM, Armaos A, Schweizer G, Nuzhdin S, Lluisma AO, Roleda MY, Fahrenkrug S. 2025. Phytohormones in Kappaphycus alvarezii: Genomic Insights, Activation Thresholds, and Implications for Seaweed-derived Biostimulants. :2025.09.19.677482. Available from: https://www.biorxiv.org/content/10.1101/2025.09.19.677482v1
Dalal A, Mishra S, Yadav MK, Yadav R, Stępniewski TM, Inoue A, Selent J, Banerjee R, Gati C, Shukla AK. 2025. Molecular basis of naturally-encoded signaling-bias at the complement anaphylatoxin receptor, C5aR1. Immunobiology 230:152974.
Daly AE, Chang AB, Purbey PK, Williams KJ, Li Shuxing, Redelings BD, Yeh G, Wu Y, Pope SD, Venkatesh B, Li Sibon, Nguyen K, Rodrigues J, Jorgensen K, Dasgupta A, Siggers T, Chen L, Smale ST. 2025. Stepwise neofunctionalization of the NF-κB family member Rel during vertebrate evolution. Nat Immunol 26:760–774.
DeWeese K, Molano G, Calhoun S, Lipzen A, Jenkins J, Williams M, Plott C, Talag J, Grimwood J, Jannink J-L, Grigoriev IV, Schmutz J, Yarish C, Nuzhdin S, Lindell S. 2025. Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima. Front. Genet. [Internet] 16. Available from: https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2025.1494480/full
Diesel JF, Molano G, Nuzhdin SV. 2025. The mutation atlas of giant kelp (Macrocystis pyrifera): a mutation database resource for natural knockouts. Front. Plant Sci. [Internet] 15. Available from: https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1338572/full
Fixman B, Manjunath L, Sell P, Wang S, Margaryan T, Qiu C, Yang H, Buisson R, Chen X. 2025. APOBEC3B Promotes SARS-CoV-2 Through Activation of PKR/eIF2⍺ and AMPD2 Dysregulation. Viruses 17:1176.
Frei MS, Sanchez SA, He X, Liu L, Schneider F, Wang Z, Hakozaki H, Li Y, Lyons AC, Rohm TV, Olefsky JM, Shi L, Schöneberg J, Fraser SE, Mehta S, Wang Y, Zhang J. 2025. Far-red chemigenetic kinase biosensors enable multiplexed and super-resolved imaging of signaling networks. Nat Biotechnol:1–10.
Ghione CR, Dean MD. 2025. Sexual size dimorphism correlates with the number of androgen response elements in mammals, but only in small-bodied species. Genome Biology and Evolution 17:evaf068.
Ghione CR, Schultz NG, Park S, Menke DB, Dean MD. 2025. Genetic disruption of the baculum compromises the ability of male mice to copulate. PLOS Genetics 21:e1011787.
Goldstein I, Hale JJ, Ehrenreich IM. 2025. Global epistasis in budding yeast driven by many natural variants whose effects scale with fitness. :2025.05.28.656710. Available from: https://www.biorxiv.org/content/10.1101/2025.05.28.656710v1
Higa N, Limb A, Hennes V, Rivera A, Nevarez R, Kolatkar A, Tweed CK, Riker AI, Lee Y, Tafra L, Perkins JG, Shriver CD, Kuhn P, Hicks J. 2025. Simultaneous expression of epithelial and immune cell markers in circulating tumor cells identified in patients with stage 4 breast cancer. Commun Med (Lond) 5:309.
Hong M, Koo DES, Junge J, Fraser SE, Cutrale F. 2025. Transforming hyperspectral data into insight: the DREAM approach for pathology. Biomed. Opt. Express, BOE 16:4420–4437.
Huang E, Sirivolu S, Yellapantula V, Kale P, Kuhn P, Hicks J, Brown B, Paniagua H, Pandya D, Shah R, Berry JL, Xu L. 2025. Aqueous Humor Liquid Biopsy Identifies Murine Double Minute 4 Segmental Gain in Retinoblastoma: Implications for Chemotherapy Response and Precision Oncology. JCO Precis Oncol 9:e2500250.
Ito F, Li Z, Minakhin L, Khant H, Pomerantz R, Chen X. 2025. Structural basis for Polθ-helicase DNA binding and microhomology-mediated end-joining. Nature Communications 16.
Ito F, Li Z, Minakhin L, Khant HA, Pomerantz RT, Chen XS. 2025. Structural Basis for Polθ-Helicase DNA Binding and Microhomology-Mediated End-Joining. bioRxiv 19:3725.
Jakowec N, Finkel S. 2025. Controlled burn: interconnections between energy-spilling pathways and metabolic signaling in bacteria. Journal of Bacteriology 207:e0054224.
Jin L, Liu M, Cheng X. 2025. An acentrosomal aster with atypical microtubule polarity recruits cytokinesis signals to its center in Xenopus egg extracts. J Cell Sci 138:jcs263766.
Kamal M, Shishido SN, Mason J, Patel K, Manasanch EE, Orlowski RZ, Kuhn P. 2025a. Single-cell proteomic analysis reveals Multiple Myeloma heterogeneity and the dynamics of the tumor immune microenvironment in precursor and advanced states. Neoplasia 66:101189.
Kamal M, Shishido SN, Mason J, Patel K, Manasanch EE, Orlowski RZ, Kuhn P. 2025b. Corrigendum to “Single-cell proteomic analysis reveals Multiple Myeloma heterogeneity and the dynamics of the tumor immune microenvironment in precursor and advanced states” [Neoplasia 66 (2025) 1101189]. Neoplasia 69:101226.
Kast DJ, Pulver C, Dines J, Dean M. 2025. Exploring Comparative Physiology and Evolution: Understanding Homologous Structures with Students. Current: The Journal of Marine Education [Internet] 40. Available from: https://current-journal.com/articles/123
Khan S, Tyson AS, Ranjbar M, Zhang Z, Singh J, Han GW, Gati C. 2025. Structural snapshots capture nucleotide release at the μ-opioid receptor. Nature:1–9.
Knittel TL, Montgomery BE, Sprister RA, Magelky CN, Smith MJ, Soto-Ojeda M, Guthrie M, Phillips CM, Montgomery TA. 2025. Argonaute-siRNA loading via the RNA-binding protein RDE-4 in C. elegans. :2025.05.06.652520. Available from: https://www.biorxiv.org/content/10.1101/2025.05.06.652520v1
Kovalev M, Arismendi GM, Wade RM, Molano G, Miller R, Reed D, Alberto F, Nuzhdin S. 2025. Insights from farming Macrocystis pyrifera offshore: phenotypic analysis, genome-wide association studies, genomic selection. :2025.09.22.677618. Available from: https://www.biorxiv.org/content/10.1101/2025.09.22.677618v1
Lough-Stevens M, Ghione CR, Dean MD. 2025. The lifespan of corpora lutea in non-pregnant females is positively correlated with gestation length. Journal of Mammalogy:505–511.
Mattins F, Nagrath S, Fan Y, Manea TKD, Das S, Shankar A, Tower J. 2025. Machine learning scoring reveals increased frequency of falls proximal to death in Drosophila melanogaster. The Journals of Gerontology, Series A: Biological Sciences and Medical Sciences:glaf029.
Merigliano C, Ryu T, Cibulka J, Rawal CC, See CD, Mitra A, Reynolds TW, Butova NL, Caridi CP, Li X, Wang J, Deng C, Chenoweth DM, Sung P, Capelson M, Krejčí L, Chiolo I. 2025. Off-pore Nup98 condensates mobilize heterochromatic breaks and exclude Rad51. Molecular Cell 85:2355-2373.e11.
Mishra S, Dalal A, Yadav MK, Yadav R, Ganguly M, Lee J, Banerjee R, Woodruff T, Gati C, Shukla AK. 2025. A conserved molecular mechanism orchestrates diverse ligand recognition at the complement anaphylatoxin receptor C3aR. Immunobiology 230:152978.
Mishra S, Yadav MK, Dalal A, Ganguly M, Yadav R, Sawada K, Tiwari D, Roy N, Banerjee N, Fung JN, Marallag J, Cui CS, Li XX, Lee JD, Dsouza CA, Saha S, Sarma P, Rawat G, Zhu H, Khant HA, Clark RJ, Sano FK, Banerjee R, Woodruff TM, Nureki O, Gati C, Shukla AK. 2025. Molecular fingerprints of a convergent mechanism orchestrating diverse ligand recognition and species-specific pharmacology at the complement anaphylatoxin receptors. bioRxiv:2025.05.26.656101.
Morton D. 2025. Abstract 3042 Exploring the Crossroads of Neurodevelopment and Neurodegeneration: The RNA Exosome and Human Disease. Journal of Biological Chemistry [Internet] 301. Available from: https://www.jbc.org/article/S0021-9258(25)00715-X/abstract
Murgoitio-Esandi J, Tessone D, Naghdloo A, Shishido SN, Zhang B, Xu H, Dasgupta A, Mason J, Nagaraju RM, Courcoubetis G, Hicks J, Kuhn P, Oberai AA. 2025. Unsupervised detection of rare events in liquid biopsy assays. npj Precis. Onc. 9:225.
Naghdloo A, Tessone D, Nagaraju RM, Zhang B, Kang J, Li S, Oberai A, Hicks JB, Kuhn P. 2025. Representation learning enables robust single cell phenotyping in whole slide liquid biopsy imaging. Sci Rep 15:36589.
Nicolini F, Nuzhdin SV, Ghiselli F, Luchetti A, Milani L. 2025. Comparative Genomics of Sex-Determination-Related Genes Reveals Shared Evolutionary Patterns Between Bivalves and Mammals, but Not Fruit Flies. Molecular Ecology 34:e70103.
Orengo C, Ehrenreich IM, Marcotte EM, Kolodny R, Ben-Tal N, de Boer CG, McWhite CD, Ranganathan R, Honig B, Bromberg Y, Thornton JW. 2025. What can recent methodological advances help us understand about protein and genome evolution?. Cell Systems 15.
Park JM, Pinski DF, Forsburg SL. 2025. Diploidy confers genomic instability in Schizosaccharomyces pombe. Genetics 230:iyaf078.
Pinaud F, Haselwandter C. 2025. NSF-ANR MCB/PHY – MechaLINC: Mechanistics of LINC-mediated force transmission. NSF Award 24:13064.
Posa L, Romano G, Ji C, Khan S, Paz B, Han GW, Nazarova A, Zaidi S, Katritch V, Gati C, Trauner D, Levitz J. 2025. A Photochromic Controller for Reversible Regulation of Peripheral Opioid Analgesia. The Journal of Pain [Internet] 29. Available from: https://www.jpain.org/article/S1526-5900(25)00074-4/abstract
Posa L, Romano G, Ji X, Khan S, Paz BM, Han GW, Nazarova AL, Zaidi SA, Ranjbar M, Pleil K, Katritch V, Gati C, Trauner D, Levitz J. 2025. An opioid efficacy switch for reversible optical control of peripheral analgesia. :2024.12.16.628735. Available from: https://www.biorxiv.org/content/10.1101/2024.12.16.628735v3
Rivera JF, Huang H, Weng W, Sohn H, Girasole AE, Li S, Albanese MA, Qin M, Tao C, Klug ME, Rao S, Paletzki R, Herring BE, Kanoski SE, Zhang LI, Gerfen CR, Sabatini BL, Arnold DB. 2025. ATLAS: a rationally designed anterograde transsynaptic tracer. Nat Methods 22:1101–1111.
Rizvi T, Tuni C, Reinhold K. 2025. From mating to sperm storage: density-dependent plasticity in pre-and post-copulatory shared mating traits. Available from: https://ecoevorxiv.org/repository/view/10951/
Schneider F, Cuala J, Pan Y, Fuente OA de la, Cherchia L, Fraser SE. 2025. BPS2025 – Navigating cross-excitation: Multiplexing NADH and fluorescent proteins in metabolic imaging. Biophysical Journal 124:161a.
Sebastian H, Robador A, Ray D, Angermeyer A, D’Hondt S, Huber JA, Finkel SE. 2025. Identifying Potential Nutrient Acquisition Mechanisms of for Long-Term Survival: Adaptive Evolution of Halomonas Isolated from Subseafloor Crustal Fluids. Front. Microbiol. 16.
Serebnitskiy Z, Orban K, Finkel S. 2025. A role for Dps ferritin activity in long-term survival of Escherichia coli. Microbiology Spectrum 13.
Shishido SN, Courcoubetis G, Kuhn P, Mason J. 2025. Automated Single-Cell Analysis in the Liquid Biopsy of Breast Cancer. Cancers 17:2779.
Shishido SN, Shah A, Mason J, Scarpa JR, Amar D, Desiderio D, Pedoto A, De Camilli A, Guaran C, Jackson JC, Lewis A, Zanone M, Nystrom L, Fischer GW, Jones DR, Gulati A, Scher H, Barnett E, Mincer JS, Kuhn P. 2025. Anti-tumour effects of perioperative ketamine in lung cancer: a non-randomised, exploratory biomarker study. British Journal of Anaesthesia 135:1316–1319.
Torres-Pérez JV, Anagianni S, Sheardown E, Miletto-Petrazzini ME, Fraser SE, Butterworth B, Vallortigara G, Brennan CH. 2026. Lack of Williams syndrome-associated genes alters quantity discrimination in zebrafish. Behavioural Brain Research 496:115860.
Tower J. 2025. Editorial: Mechanistic theories of aging. Front. Aging [Internet] 6. Available from: https://www.frontiersin.org/journals/aging/articles/10.3389/fragi.2025.1617783/full
Truong T, Keomanee-Dizon K, Fraser SE. 2025. Optimized photon collection for light-sheet microscopy. Available from: https://patents.google.com/patent/US12411088B2/en
Tyson AS, Khan S, Motiwala Z, Han GW, Zhang Z, Ranjbar M, Styrpejko D, Ramos-Gonzalez N, Woo S, Villers K, Gati C. 2025. Molecular mechanisms of inverse agonism via κ-opioid receptor–G protein complexes. Nature Chemical Biology:1–12.
Waldron RT, Wang R, Shishido SN, Lugea A, Ibrahim AG, Mason J, Ayres M, Parker SJ, Van Eyk JE, Lo SK, Kuhn P, Pandol SJ. 2025. Selective removal of proteins and microvesicles ex vivo from blood of pancreatic cancer patients using bioengineered adsorption filters. Cancer Letters 614:217546.
Wallis DC, Phillips CM. 2025. RG motifs promote piRNA-mediated gene silencing in C. elegans. :2025.05.12.653514. Available from: https://www.biorxiv.org/content/10.1101/2025.05.12.653514v1
Wang GL, Jiang Y, Sun Y, Nasertorabi F, Weller JA, Mitra R, Batyuk A, Aparicio OM, Cherezov V, Rohs R. 2025. Novel fold and wing structure of Forkhead transcription factor facilitate DNA binding. Nucleic Acids Res 53:gkaf946.
Wang Z, Gurlo T, Satin LS, Fraser SE, Butler PC. 2025. Subcellular Compartmentalization of Glucose Mediated Insulin Secretion. Cells 14:198.
Wu L, Pinaud F. 2025. BPS2025-Nanoscale imaging of SUN1 LINC complex organization during nuclear mechanics. Biophysical Journal 124:143a.
Yadav R, Han GW, Gati C. 2025. Molecular basis of human GABA transporter 3 inhibition. Nat Commun 16:3830.
Yang SH, Coradini ALV, Hull CB, Lusk DT, Ehrenreich IM. 2025. Synthetic collinearization of a chromosome segment enables genetic dissection of incompatibility between distant genera. :2025.09.29.679105. Available from: https://www.biorxiv.org/content/10.1101/2025.09.29.679105v1
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Zhai D, Pinaud F. 2025. BPS2025-Investigating emerin self-association in vitro using single-molecule FRET. Biophysical Journal 124:630a.
Zhao JM, Nguyen DAH, Cervantes D, Vong B, Phillips CM. 2025. The Ubiquitin-Proteasome Pathway Mediates Selective Degradation of Unloaded Argonautes in C. elegans. :2025.09.10.675458. Available from: https://www.biorxiv.org/content/10.1101/2025.09.10.675458v1
2024
Alnajjar KS, Wang K, Alvarado-Cruz I, Chavira C, Negahbani A, Nakhjiri M, Minard C, Garcia-Barboza B, Kashemirov BA, McKenna CE, Goodman MF, Sweasy JB. 2024. Modifying the Basicity of the dNTP Leaving Group Modulates Precatalytic Conformational Changes of DNA Polymerase β. Biochemistry 63:1412–1422.
Amacker A, Peng C-C, Jiang, Nan, Sirivolu S, Higa N, Stachelek K, Reiser B, Kuhn P, Cobrinik D, Neviani P, Berry JL, Xu L, Jovanovic-Talisman T. 2024. Phenotypic biomarkers of aqueous extracellular vesicles from retinoblastoma eyes. Journal of Molecular Markers 25:11660.
Archambeau A, Barekatain M, Wang Z, Cherezov V, Fraser SE, White KL, Hayes MA. 2024. Investigating the use of direct current insulator-based dielectrophoresis to study insulin vesicle subpopulations. Biophysical Journal 123:105a.
Bagheri P, Eremina OE, Fernando A, Kamal M, Stegis I, Vazquez C, Shishido SN, Kuhn P, Zavaleta C. 2024. A Systematic Approach toward Enabling Maximal Targeting Efficiency of Cell Surface Proteins with Actively Targeted SERS Nanoparticles. ACS Appl. Mater. Interfaces 16:15847–15860.
Bai L, Courcoubetis G, Mason J, Hicks JB, Nieva J, Kuhn P, Shishido SN. 2024. Longitudinal tracking of circulating rare events in the liquid biopsy of stage III–IV non-small cell lung cancer patients. Discov Onc 15:142.
Barekatain M, Liu Y, Archambeau A, Cherezov V, Fraser S, White KL, Hayes MA. 2024. Insulator-based dielectrophoresis-assisted separation of insulin secretory vesicles.Ailion M, Malhotra V, Ailion M, Kreutzberger AJ, editors. eLife 13:e74989.
Berry JL, Pike S, Shah R, Reid MW, Peng C-C, Wang Y, Yellapantula V, Biegel J, Kuhn P, Hicks J. 2024. Aqueous humor liquid biopsy as a Companion diagnostic for retinoblastoma: implications for diagnosis, prognosis, and Therapeutic options: five years of progress. American journal of ophthalmology 263:188–205.
Chen S, Phillips CM. 2024a. Silencing of a NRDE-3 transgene in C. elegans germ cells and early embryos is mediated by the RNAi pathway. microPublication 2024:10.17912.
Chen S, Phillips CM. 2024b. HRDE-2 drives small RNA specificity for the nuclear Argonaute protein HRDE-1. Nature Communications 15:957.
Cherchia L, Schneider F, Finley SD, Fraser SE. 2024. Integrating mechanistic modeling and quantitative imaging to reveal pancreatic beta cell signaling dynamics. Biophysical Journal 123:411a–412a.
Choi HY, Zhu Y, Zhao X, Mehta S, Hernandez JC, Lee J-J, Kou Y, Machida R, Giacca M, Del Sal G, Chen L. 2024. NOTCH localizes to mitochondria through the TBC1D15-FIS1 interaction and is stabilized via blockade of E3 ligase and CDK8 recruitment to reprogram tumor-initiating cells. Experimental & Molecular Medicine 56:461–477.
Chung CS, Kou Y, Shemtov SJ, Verheijen BM, Flores I, Love K, Del Dosso A, Thorwald MA, Liu Y, Hicks D, Benayoun BA, Chen L. 2024. Transcript errors generate amyloid-like proteins in human cells. Nature Communications 15:8676.
Dai S, Guo L, Dey R, Guo M, Zhang X, Bates D, Cayford J, Jiang L, Wei H, Chen Z, Chen L. 2024. Structural insights into the HDAC4–MEF2A–DNA complex and its implication in long-range transcriptional regulation. Nucleic Acids Research 52:2711–2723.
Dorff TB, Blanchard MS, Adkins LN, Luebbert L, Leggett N, Shishido SN, Macias A, Del Real MM, Dhapola G, Egelston C, Kuhn P. 2024. PSCA-CAR T cell therapy in metastatic castration-resistant prostate cancer: a phase 1 trial. Nature medicine 30:1636–1644.
Ekdahl AM, Julien T, Suraj S, Kribelbauer J, Tavazoie S, Freddolino PL, Contreras LM. 2024. Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs. bioRxiv:2024.06.20.599902.
Fixman B, Díaz-Gay M, Qiu C, Margaryan T, Lee B, Chen XS. 2024. Validation of the Apobec3a-Mediated Rna Single Base Substitution Signature. Journal of Molecular Biology 436.
Forsburg SL. 2024. The micromammals. G3: Genes, Genomes, Genetics 14:jkae073.
Fraser SE, Pudavar H, Reddington J, Junge JA, Lin J, Ossato G. 2024. STELLARIS 8 DIVE: a rainbow of possibilities with multiphoton excitation and lifetime-based information. Multiphoton Microscopy in the Biomedical Sciences 12847:32–33.
Hale JJ, Matsui T, Goldstein I, Mullis MN, Roy KR, Ville CN, Miller D, Wang C, Reynolds T, Steinmetz LM, Ehrenreich IM. 2024. Genome-scale analysis of interactions between genetic perturbations and natural variation. Nature Communications 15:4234.
Harden M, Kovalev M, Molano G, Yorke C, Miller R, Reed D, Alberto F, Koos DS, Lansford R, Nuzhdin S. 2024a. Heat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages. Communications Biology 7:1147.
Harden M, Kovalev M, Molano G, Yorke C, Miller R, Reed D, Alberto F, Koos DS, Lansford R, Nuzhdin S. 2024b. Author Correction: Heat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages. Communications Biology 7:1639.
Higa N, Welter L, Xu L, Kolatkar A, Bramlett KS, Gjoerup OV, Graf R, Huang RS, Leary RJ, Lee Y, Kuhn P. 2024. Liquid Biopsy Profiling with Multiple Tests in Patients with Metastatic Breast Cancer. Journal of Molecular Pathology 5:199–214.
Higginson LA, Wang X, He K, Torstrick M, Kim M, Benayoun BA, MacLean A, Chanfreau GF, Morton DJ. 2024. The RNA exosome maintains cellular RNA homeostasis by controlling transcript abundance in the brain. :2024.10.30.620488. Available from: https://www.biorxiv.org/content/10.1101/2024.10.30.620488v1
Huang WYC, Ferrell JE, Cheng X. 2024. Measuring Molecular Diffusion in Self-Organizing Xenopus Extracts by Fluorescence Correlation Spectroscopy. In: Castro A, Lacroix B, editors. Cell Cycle Control. Vol. 2740. Methods in Molecular Biology. New York, NY: Springer US. p. 107–115.
Isdaner AJ, Levis NA, Ehrenreich IM, Pfennig DW. 2024. Genetic variants underlying plasticity in natural populations of spadefoot toads: environmental assessment versus phenotypic response. Genes 15:611.
Ithnin M, Vu WT, Marjuni M, Amiruddin MD, Singh A, Suryawanshi V, Serdari NM, Zaki NM, Nuzhdin SV, Chang PL. 2024. Elaeis species specific SNPs allow authentication of natural hybrids in a wild E. oleifera germplasm collection. Biocatalysis and Agricultural Biotechnology 60:103304.
Ito F, Li Z, Minakhin L, Chandramouly G, Tyagi M, Betsch R, Krais JJ, Taberi B, Vekariya U, Calbert M, Skorski T, Johnson N, Chen XS, Pomerantz RT. 2024. Structural basis for a Polθ helicase small-molecule inhibitor revealed by cryo-EM. Nat Commun 15:7003.
Ito F, Yang H, Zhou ZH, Chen XS. 2024. Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15. Protein & Cell 15:547–552.
Jaszczur MM, Pham P, Ojha D, Pham CQ, McDonald JP, Woodgate R, Goodman MF. 2024. Pathogen-encoded Rum DNA polymerase drives rapid bacterial drug resistance. Nucleic Acids Research 52:12987–13002.
Kerman BE, Junge JA, Fayzullina M, Wang J, Yang LZ, Meuret CJ, Mertens J, Seidler P, Fraser S, Yassine HN. 2024. Studying APOE Aggregation in Live Cells and Human Neurons. Alzheimer’s & Dementia 20:e092614.
Kingsley SF, Seo Y, Wood A, Wani KA, Gonzalez X, Irazoqui J, Finkel SE, Tissenbaum HA. 2024. Glucose-fed microbiota alters C. elegans intestinal epithelium and increases susceptibility to multiple bacterial pathogens. Sci Rep 14:13177.
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Li T, Petreaca RC, Forsburg SL. 2024. Chromodomain mutation in S. pombe Kat5/Mst1 affects centromere dynamics and DNA repair. Plos one 19:e0300732.
Lin W, Tseng K, Fraser SE, Junge J, White KL. 2024. Decoding Insulin Secretory Granule Maturation Using Genetically Encoded pH Sensors. ACS Sens. 9:6032–6039.
Luu P, Fraser SE, Schneider F. 2024. More than double the fun with two-photon excitation microscopy. Commun Biol 7:1–15.
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