In Press
Huynh O, Michael WM. In press. An NHEJ-independent Role for DNA-PKcs in ATR activation at DNA Double-Strand Breaks. Nucleic Acids Res.
2026
Ährlund-Richter S, Osako Y, Jenks KR, Odom E, Huang H, Arnold DB, Sur M. 2026. Distinct roles of prefrontal subregion feedback to the primary visual cortex across behavioral states. Neuron 114:492–506.e6. Available from: https://doi.org/10.1016/j.neuron.2025.10.037
Alves-Lima C, Montecinos G, Escalona M, Calhoun S, Marimuthu M, Nguyen O, Beraut E, Lipzen A, Grigoriev IV, Raimondi P, et al. 2026. The reference genome for the northeastern Pacific bull kelp, Nereocystis luetkeana. Journal of Heredity 117:478–491. Available from: https://doi.org/10.1093/jhered/esaf077
Bai J, Koos DS, Stachelek K, Bhat B, Asatrian S, Belen P, Sanghari S, Stepanian K, Fraser S, Moats RA. 2026. Post-transcriptional silencing of p14ARF drives retinoblastoma malignant conversion in CRISPR-engineered retinal organoids. Cancer Research 86:6182–6182. Available from: https://aacrjournals.org/cancerres/article/86/7_Supplement/6182/782561
Brünger T, Krey I, Kim S, Klöckner C, Myers SJ, Johannesen KM, Stefanski A, Taylor G, Perez-Palma E, Macnee M. 2026. Gene Portals: A Framework for Integrating Clinical, Functional, and Structural Evidence into Rare Disease Variant Classification. Available from: https://orbilu.uni.lu/handle/10993/67959
Chandra M, Nuzhdin S, Gracey A. 2026. Differential transcriptomic and circadian regulation across giant kelp blades based on relative tissue age. Journal of phycology. Available from: https://doi.org/10.1111/jpy.70137
Chen S, Phillips CM. 2026. Decoding Argonaute specificity: insights from C. elegans and beyond. RNA 32:290–310. Available from: https://rnajournal.cshlp.org/content/32/3/290.short
Chen S, Prescott LH, Mello CC, Phillips CM. 2026. Systematic identification of germ granule proteins reveals specialized roles in RNAi and small RNA inheritance. Genes & Development 40:1484–1507. Available from: https://doi.org/10.1101/gad.353482.125
Chen X, Wu S, Yue S, Zhang L, Liu X, Dai S, Li J, Zhang H, Wei H, Guo M, et al. 2026. FOXC2 represses NFAT1-dependent transcription through a DNA-facilitated protein–protein interaction. Nucleic Acids Research 54:gkag367. Available from: https://doi.org/10.1093/nar/gkag367
Cheng K, Aliar K, Manshaei R, Forsburg SL, Mazalek A, Sabatinos SA. 2026. Analyzing DNA Replication Fork Stability and Collapse Using Chromatin Fiber Analysis and the R-ODD-BLOBS Program. Computational and Structural Biotechnology Journal 35:0140. Available from: https://doi.org/10.34133/csbj.0140
Chmura SJ, Winter KA, Woodward WA, Borges VF, Salama JK, Al-Hallaq HA, Matuszak MM, Milano MT, Jaskowiak NT, Jagsi R, et al. 2026. NRG-BR002: A Randomized Phase II/III Trial of Metastasis-Directed Ablation With First-Line Systemic Therapy for Oligometastatic Breast Cancer. Journal of Clinical Oncology:JCO-26-00201. Available from: https://doi.org/10.1200/jco-26-00201
Cuala J, Alberto de la Fuente O, Cherchia L, Pan Y, Singh T, Deng C, Velazquez A, White K, Georgia SK, Kay S, et al. 2026. Bright Probes, Blurred Metabolism: Navigating Fluorescent Protein Cross-Excitation in NADH FLIM. Biophysical Reports:100294. Available from: https://doi.org/10.1016/j.bpr.2026.100294
Dalal A, Yadav MK, Ganguly M, Mishra S, Yadav R, Sinha S, Roy N, Tiwari D, Mukherjee D, Reyaz A, et al. 2026. Structural basis of complement anaphylatoxin receptor activation by an immunostimulant lead candidate. Proceedings of the National Academy of Sciences 123:e2614459123. Available from: https://doi.org/10.1073/pnas.2614459123
Das S, Patel Y, Wang K, Tower J. 2026. Analysis of Fall and Jump Behaviors in Freely Moving Drosophila melanogaster Using 58 fps Video. Insects 17:624. Available from: https://doi.org/10.3390/insects17060624
Fallon C, Ling L, Cooper BH, Ceolin S, Chiu T-P, Mitra R, Mühling B, Srinivasan V, Durmaz AD, Veselinovic D, et al. 2026. Quantitative modulation of a spatial enhancer through the biophysical properties of a transcription factor binding site. Sci. Adv. 12:eadz5902. Available from: https://www.science.org/doi/10.1126/sciadv.adz5902
Gralak AJ, Faltejskova K, Yang AWH, Steiner C, Russeil J, Grenningloh N, Inukai S, Demir M, Dainese R, Owen C, et al. 2026. Identification of methylation-sensitive human transcription factors using meSMiLE-seq. Nature Communications 17:7771. Available from: https://doi.org/10.1038/s41467-026-71387-y
Harden M, Koos DS, Arzuyan K, Kovalev M, Lansford R, Alberto F, Nuzhdin S. 2026. Heat stress induces organelle alterations in Macrocystis pyrifera gametophytes. Journal of Phycology 62:1129–1146. Available from: https://doi.org/10.1111/jpy.70196
Harden M, M. Kovalev, G. Molano, R. Lansford, D. S. Koos, F. Alberto, S. V. Nuzhdin. 2026. Confocal and IVIS imaging analysis of Macrocystis pyrifera gametophytes reveals relocalization of chloroplasts and loss of nuclei in response to heat stress. Journal of Phycology.
Higginson LA, Wang X, He K, Torstrick M, Kim M, Wijeratne HRS, Runnebohm AM, Benayoun BA, MacLean A, Chanfreau GF, et al. 2026. The RNA exosome maintains cellular RNA homeostasis by controlling transcript abundance in the brain. Cell Reports 45. Available from: https://www.cell.com/cell-reports/abstract/S2211-1247(25)01501-3
Hoi XP, Stangis MM, Glass SE, Kim J-H, Kang SW, Brennen WN, Li Z, Grady WM, Yegnasubramanian S, Kuhn P. 2026. Cellular senescence in precancer lesions and early-stage cancers. Cancer cell 44:6–11. Available from: https://www.cell.com/cancer-cell/abstract/S1535-6108(25)00447-7
Huang E, Chen Y, Peng C-C, Liang D, Reid M, Khoche A, Kuhn P, Mason J, Jiang X, Berry JL, et al. 2026. Modeled Aqueous Humor Protein Concentrations to Enable Biomarker Development in Uveal Melanoma. International Journal of Molecular Sciences 27:3124. Available from: https://doi.org/10.3390/ijms27073124
Jakowec NA, Chopra M, Finegan M, Finkel SE. 2026. Synergistic interactions between glycogen and trehalose mediate adaptation to the stationary phase in E. coli. J Bacteriol:e0054425. Available from: https://doi.org/10.1128/jb.00544-25
Jiang Y, Shewchuk AM, Chiu T-P, Li J, Kribelbauer-Swietek JF, Gompel N, Rohs R. 2026. Readout of intrinsic and induced DNA shape by homeodomain transcription factor complexes. Biophysical Journal. Available from: https://www.cell.com/biophysj/fulltext/S0006-3495(26)00220-1
Jolma A, Hernandez-Corchado A, Yang AWH, Fathi A, Laverty KU, Brechalov A, Razavi R, Albu M, Zheng H, The Codebook Consortium, et al. 2026. GHT-SELEX demonstrates unexpectedly high intrinsic sequence specificity and complex DNA binding of many human transcription factors. Nature Methods 23:1775–1785. Available from: https://europepmc.org/articles/PMC13541613
Jolma A, Laverty KU, Fathi A, Yang AWH, Yellan I, Vorontsov IE, Gralak AJ, Kribelbauer-Swietek JF, Inukai S, Razavi R, et al. 2026. An expanded codebook of human transcription factor DNA-binding specificity. Nature 657:275–283. Available from: https://doi.org/10.1038/s41586-026-10798-9
Jones, CE, Yuan, JP, Forsburg, SL. 2026. Pathways of rDNA Copy Number Homeostasis in Schizosaccharomyces pombe. G3: Genes, Genomes, Genetics.
Klug ME, Décarie-Spain L, Lauer LT, Sortman BW, Mo B, Kao AE, Moody OP, Morano NR, Huang H, Arnold DB, et al. 2026. A ventral hippocampus to nucleus accumbens pathway regulates impulsivity in male but not female rats. Neuropsychopharmacology 51:1779–1789. Available from: https://doi.org/10.1038/s41386-026-02477-0
Klug ME, Shanmugam MV, Huang H, Arnold D, Hahn JD, Kanoski SE. 2026. Transsynaptic neural circuit mapping of ventral hippocampus motivational control systems. Brain Structure and Function 231:106. Available from: https://doi.org/10.1007/s00429-026-03164-y
Korstanje R, Strong R, Salmon AB, Bogue MA, Curran SP, Diaz V, Fernandez E, Ginsburg B, Han M, Harrison DE, et al. 2026. Astaxanthin, meclizine, mitoglitazone, pioglitazone, alpha-ketoglutarate, mifepristone, methotrexate, and atorvastatin-telmisartan do not increase lifespan in UM-HET3 mice. GeroScience. Available from: https://link.springer.com/10.1007/s11357-026-02201-2
Kovalev M, Montecinos Arismendi G, Yorke C, Wade RM, Molano G, Miller R, Reed D, Alberto F, Nuzhdin S. 2026. Insights from farming Macrocystis pyrifera offshore: phenotypic analysis, genome-wide association studies, genomic selection. Heredity 135:486–496. Available from: https://doi.org/10.1038/s41437-026-00855-4
Li S, Feng S, Liu Y, Qin C, Zhang J, Saito T, Xie X, Fu W, Wang R, Zheng Y, et al. 2026. Herpesviruses hijack ISGylation to promote viral capsid assembly. Science Advances 12:eaeg7872. Available from: https://doi.org/10.1126/sciadv.aeg7872
Lusk DT, Ehrenreich IM. 2026. Synthetic Chromosomes in Yeast: A Platform for Understanding and Programming Eukaryotic Life. Microbial Biotechnology 19:e70444. Available from: https://doi.org/10.1111/1751-7915.70444
Mishra S, Yadav MK, Dalal A, Ganguly M, Yadav R, Sawada K, Tiwari D, Roy N, Banerjee N, Fung JN, et al. 2026. Molecular basis of diverse ligand recognition and species-specific pharmacology at the complement anaphylatoxin receptor C3aR. Nature Communications 17:10483. Available from: https://doi.org/10.1038/s41467-026-76518-z
Ojha D, Jaszczur M, Pham P, McDonald JP, Selod JC, Woodgate R, Goodman MF. 2026. Acinetobacter baumannii encodes multiple mutagenically and biochemically active DNA polymerase V variants. Nucleic Acids Research 54:gkag300. Available from: https://academic.oup.com/nar/article/doi/10.1093/nar/gkag300/8625894
Park C, Yang Z, Nashef A, Gim J, Bahn S, Kim GH, Zhang K, Cathala L, Hong S, Im Y, et al. 2026. Synchronous climbing fiber activity enables instructive signaling for cerebellar learning through modulation of disinhibitory circuits. Nature Neuroscience 29:1425–1438. Available from: https://doi.org/10.1038/s41593-026-02268-2
Pham DM, Rivera A, Lin A, Udov A, Adkins LN, Martinez C, Forman SJ, Priceman SJ, Dorff TB, Kuhn P, et al. 2026. Clonal circulating tumor cell mobilization following chimeric antigen receptor T-cell therapy in metastatic castration-resistant prostate cancer. Journal for ImmunoTherapy of Cancer 14:e015764. Available from: https://doi.org/10.1136/jitc-2026-015764
Posa L, Romano GR, Ji X, Khan S, Nazarova AL, Sharghi Moshtaghin S, Paz B, Han GW, Arefin A, Gonzalez-Hernandez AJ, et al. 2026. An opioid efficacy switch for reversible optical control of analgesia. Cell. Available from: https://doi.org/10.1016/j.cell.2026.09.042
Raad RJ, Yang S-C, Wang JL, Rosenbaum JJ, Nieva J, Kolatkar A, Shishido SN, Berelson WM, West AJ, Kuhn P, et al. 2026. Copper isotope fractionation and copper-to-zinc ratios reveal altered metal homeostasis in prostate cancer. Scientific Reports 16:18249. Available from: https://doi.org/10.1038/s41598-026-46224-3
Razavi R, Fathi A, Yellan I, Brechalov A, Laverty KU, Jolma A, Hernandez-Corchado A, Zheng H, Yang AWH, Albu M, et al. 2026. Extensive binding of poorly characterized human transcription factors to genomic dark matter. Nature Communications 17:7770. Available from: https://europepmc.org/articles/PMC13444102
Sarraf D, Corvi F, Rosenfeld PJ, Ach T, Blodi B, Bottoni F, Cozzi M, Chakravarthy U, Chew EY, Csaky K, et al. 2026. Standardizing Measurement of Complete Retinal Pigment Epithelial and Outer Retinal Atrophy: Classification of Atrophy Meeting Report 8. Ophthalmology Retina 10:633–641. Available from: https://doi.org/10.1016/j.oret.2026.01.017
Shishido SN, Chaudhary S, Ward I, Plascencia-Laija C, Zdanowicz A, Yellapantula V, Mason J, Hicks J, Navid F, Kuhn P. 2026. Enrichment-Free Rare Cell Profiling in Pediatric Osteosarcoma Reveals a Circulating Cell Population Associated with Relapse-Free Survival. Cancers 18:3123. Available from: https://doi.org/10.3390/cancers18193123
Shishido SN, Chaudhuri B, Mushran V, Ihle K, Wang Y, Egelston CA, Hicks J, Feldman L, Barragan E, Kuhn P. 2026. The Landscape of Tumor Dissemination in Leptomeningeal Disease: Mapping CTC Plasticity and Regional Heterogeneity Across Blood and CSF Compartments. Cancers 18:3124. Available from: https://doi.org/10.3390/cancers18193124
Tessone D, Kamal M, Hennes V, Saadawy AH, Hwang ES, Nieva J, Hicks J, Kuhn P. 2026. OpenIMC: an open-source platform for analyzing single-cell and spatial proteomics by imaging mass cytometry. BMC Bioinformatics 27:219. Available from: https://doi.org/10.1186/s12859-026-06547-4
Toney III CF, Schultz NG, Pomidor B, Taylor J, Andronowski J, Dean MD. 2026. Testing for Functional Adaptation in a Genital Bone: Baculum Size, Shape, and Microstructure Show Little Plastic Response to Mating Across Five Rodent Species. Integrative Organismal Biology 8:obag043. Available from: https://doi.org/10.1093/iob/obag043
Torres-Pérez JV, Anagianni S, Sheardown E, Miletto-Petrazzini ME, Fraser SE, Butterworth B, Vallortigara G, Brennan CH. 2026. Lack of Williams syndrome-associated genes alters quantity discrimination in zebrafish. Behavioural Brain Research 496:115860. Available from: https://www.sciencedirect.com/science/article/pii/S0166432825004474
Vong B, Hua R, Monney J, Nuzhdin S. 2026. A forward genetics workflow for EMS mutagenesis, agar-based screening, and genomic analysis of Macrocystis pyrifera gametophytes. Frontiers in Genetics 17:1958697. (accepted; final version pending). Available from: https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2026.1958697/abstract
Wang C, Prasad A, Qi E, Pai J, Law J, Chennapan K, Jirka G, Kuhn P, Tale M, Nocera L, et al. 2026. Augmenting Performance Status: A Preliminary Study of Objective Kinematic Assessment Using Motion Capture. Oncology and Therapy 14:735–747. Available from: https://doi.org/10.1007/s40487-026-00434-x
Yang L, Mutalib SI, Qi E, Zeng A, Thomas J, Hsu R, Kuhn P, Nocera L, Nieva J. 2026. At-home subcutaneous atezolizumab for non-small cell lung cancer: a prospective, single-arm phase II feasibility study. Lung Cancer Management 15:2738583. Available from: https://doi.org/10.1080/17581966.2026.2738583
Yang SH, Christensen AH, Coradini ALV, Hull CB, Lusk DT, Ehrenreich IM. 2026. Synthetic collinearization of a chromosome segment enables genetic dissection of incompatibility between distant genera. Genetics:iyag306. (accepted; ahead of print). Available from: https://doi.org/10.1093/genetics/iyag306
Zhao JM, Nguyen DAH, Cervantes D, Vong B, Phillips CM. 2026. The ubiquitin-proteasome pathway mediates selective degradation of unloaded Argonaute proteins in C. elegans. Genetics 232:iyag007. Available from: https://academic.oup.com/genetics/article-abstract/232/3/iyag007/8424709
2025
Alas CD, Wu L, Pinaud F, Haselwandter CA. 2025. Diffusion-driven self-assembly of emerin nanodomains at the nuclear envelope. Phys. Rev. Research 7:L012019. Available from: https://link.aps.org/doi/10.1103/PhysRevResearch.7.L012019
Arnold DB. 2025. Tracing neural circuits in the anterograde direction. Nat Methods 22:910–911. Available from: https://www.nature.com/articles/s41592-025-02671-w
Bagley SJ, Beaubier N, Balaj L, Bettegowda C, Carpenter E, Carter BS, Corner A, Dittamore R, Grossman RL, Hickman RA, et al. 2025. Minimum Technical Preanalytical, Patient, and Clinical Context Data Elements for Cerebrospinal Fluid Liquid Biopsy: Recommendations for Public Database Submissions. JCO Precis Oncol 9:e2400921. Available from: https://doi.org/10.1200/PO-24-00921
Bai J, Koos DS, Stepanian K, Stachelek K, Bhat B, Fraser SE, Moats RA, Cobrinik D. 2025. Abstract 3944: Deciphering retinoblastoma indolence-malignancy transition with RB1 knockout cone reporter retinal organoids. Cancer Res 85:3944. Available from: https://doi.org/10.1158/1538-7445.AM2025-3944
Bareghamyan A, Deng C, Daoudi S, Yadav SC, Lu X, Zhang W, Campbell RE, Kramer RH, Chenoweth DM, Arnold DB. 2025. A toolbox for ablating excitatory and inhibitory synapses. eLife 13:RP103757. Available from: https://doi.org/10.7554/eLife.103757
Bell KS, Ko S, Ali S, Bognar B, Khmelkov M, Rau N, Peng OK, Eyuboglu M, Paine J, Tong A, et al. 2025. Tissue-Specific Fluorescent Protein Turnover in Free-Moving Flies. Insects 16:583. Available from: https://www.mdpi.com/2075-4450/16/6/583
Cai S, Mai J, Hong W, Fraser SE, Cutrale F. 2025. Rapid diffused optical imaging for accurate 3D estimation of subcutaneous tissue features. iScience 28. Available from: https://doi.org/10.1016/j.isci.2025.111818
Chancellor JL, Churches N, Aguirre E, Kim D, Jacobson I, Gracey AY, Nuzhdin SV. 2025. Assessing the effects of ocean acidification on larval Mediterranean mussels (Mytilus galloprovincialis) and California mussels (Mytilus californianus): growth, survival, and microbiome community composition. Discov Oceans 2:72. Available from: https://link.springer.com/10.1007/s44289-025-00112-2
Chandramouly G, Fried W, Gordon J, Ralph D, Keuk C, Kumari S, Ramanjulu M, Auerbacher W, Minakhin L, Tredinnick T, et al. 2025. RTx-303, an Orally Bioavailable Polθ Polymerase Inhibitor That Potentiates PARP Inhibitors in BRCA Mutant Tumors. Journal of medicinal chemistry 68. Available from: https://doi.org/10.1021/acs.jmedchem.5c00551
Chen S, Phillips CM. 2025. Nuclear Argonaute protein NRDE-3 switches small RNA partners during embryogenesis to mediate temporal-specific gene regulatory activity. eLife 13:RP102226. Available from: https://doi.org/10.7554/eLife.102226
Cherchia L, Fraser SE, Schneider F, Finley SD. 2025. BPS2025 – A tale of trafficking: On prolactin receptor localization in pancreatic β-cells. Biophysical Journal 124:484a. Available from: https://www.cell.com/biophysj/abstract/S0006-3495(24)03281-8
Chiolo I, Altmeyer M, Legube G, Mekhail K. 2025. Nuclear and genome dynamics underlying DNA double-strand break repair. Nat Rev Mol Cell Biol 26:538–557. Available from: https://www.nature.com/articles/s41580-025-00828-1
Clarke CA, Mitchell BL, Alme E, Beer JP, Beer TM, Beidelschies MA, Hoyos J, Klein EA, Kuhn P, Krunic N, et al. 2025. Navigating Complexity: Perspectives on Risk Assessment in the Era of New Blood-Based Tests for Early Cancer Detection. Clin Cancer Res 31:2267–2270. Available from: https://doi.org/10.1158/1078-0432.CCR-24-4269
Cutrale F, Wang P, Fraser SE. 2025. High throughput snapshot spectral encoding device for fluorescence spectral microscopy. Google Patents. Available from: https://patents.google.com/patent/US12196679B2/en
Dalal A, Mishra S, Yadav MK, Yadav R, Stępniewski TM, Inoue A, Selent J, Banerjee R, Gati C, Shukla AK. 2025. Molecular basis of naturally-encoded signaling-bias at the complement anaphylatoxin receptor, C5aR1. Immunobiology 230:152974. Available from: https://www.sciencedirect.com/science/article/pii/S0171298525001081
Daly AE, Chang AB, Purbey PK, Williams KJ, Li S, Redelings BD, Yeh G, Wu Y, Pope SD, Venkatesh B, et al. 2025. Stepwise neofunctionalization of the NF-κB family member Rel during vertebrate evolution. Nat Immunol 26:760–774. Available from: https://www.nature.com/articles/s41590-025-02138-2
DaSilva LF, Senan S, Kribelbauer-Swietek JF, Patel ZM, Louis LK, Reddy AJ, Gabbita S, Rosen JD, Nussbaum Z, Córdova CMV. 2025. Designing synthetic regulatory elements using the generative AI framework DNA-Diffusion. Nature Genetics:1–15. Available from: https://www.nature.com/articles/s41588-025-02441-6
DeWeese K, Molano G, Calhoun S, Lipzen A, Jenkins J, Williams M, Plott C, Talag J, Grimwood J, Jannink J-L, et al. 2025. Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima. Front. Genet. 16. Available from: https://www.frontiersin.org/journals/genetics/articles/10.3389/fgene.2025.1494480/full
Diesel JF, Molano G, Nuzhdin SV. 2025. The mutation atlas of giant kelp (Macrocystis pyrifera): a mutation database resource for natural knockouts. Front. Plant Sci. 15. Available from: https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1338572/full
Ekdahl AM, Julien T, Suraj S, Kribelbauer-Swietek JF, Tavazoie S, Freddolino L, Contreras LM. 2025. Multiscale regulation of nutrient stress responses in Escherichia coli from chromatin structure to small regulatory RNAs. Nucleic Acids Research 53:gkaf647. Available from: https://europepmc.org/articles/PMC12266141
Fixman B, Manjunath L, Sell P, Wang S, Margaryan T, Qiu C, Yang H, Buisson R, Chen X. 2025. APOBEC3B Promotes SARS-CoV-2 Through Activation of PKR/eIF2⍺ and AMPD2 Dysregulation. Viruses 17:1176. Available from: https://doi.org/10.3390/v17091176
Frei MS, Sanchez SA, He X, Liu L, Schneider F, Wang Z, Hakozaki H, Li Y, Lyons AC, Rohm TV, et al. 2025. Far-red chemigenetic kinase biosensors enable multiplexed and super-resolved imaging of signaling networks. Nat Biotechnol:1–10. Available from: https://www.nature.com/articles/s41587-025-02642-8
Genutis L, Villanueva P, Graze R, Abed J, McIntyre L, Nuzhdin S. 2025. Haplotype-Resolved Chromatin Conformation Data Reveals Relationship Between Transposable Elements and Chromosomal Pairing. Genome biology and evolution 17. Available from: https://doi.org/10.1093/gbe/evaf222
Ghione CR, Dean MD. 2025. Sexual size dimorphism correlates with the number of androgen response in mammals, but only in small-bodied species. Genome Biology 17:evaf068.
Ghione CR, Schultz NG, Park S, Menke DB, Dean MD. 2025. Genetic disruption of the baculum compromises the ability of male mice to copulate. PLOS Genetics 21:e1011787. Available from: https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1011787
Goldstein I, Hale JJ, Ehrenreich IM. 2025. Global epistasis in budding yeast driven by many natural variants whose effects scale with fitness. Genetics 231:iyaf136. Available from: https://europepmc.org/articles/PMC12505298
Higa N, Limb A, Hennes V, Rivera A, Nevarez R, Kolatkar A, Tweed CK, Riker AI, Lee Y, Tafra L, et al. 2025. Simultaneous expression of epithelial and immune cell markers in circulating tumor cells identified in patients with stage 4 breast cancer. Commun Med (Lond) 5:309. Available from: https://doi.org/10.1038/s43856-025-01024-0
Hong M, Koo DES, Junge J, Fraser SE, Cutrale F. 2025. Transforming hyperspectral data into insight: the DREAM approach for pathology. Biomed. Opt. Express, BOE 16:4420–4437. Available from: https://opg.optica.org/boe/abstract.cfm?uri=boe-16-11-4420
Huang E, Sirivolu S, Yellapantula V, Kale P, Kuhn P, Hicks J, Brown B, Paniagua H, Pandya D, Shah R, et al. 2025. Aqueous Humor Liquid Biopsy Identifies Murine Double Minute 4 Segmental Gain in Retinoblastoma: Implications for Chemotherapy Response and Precision Oncology. JCO Precis Oncol 9:e2500250. Available from: https://doi.org/10.1200/PO-25-00250
Ito F, Li Z, Minakhin L, Khant H, Pomerantz R, Chen X. 2025. Structural basis for Polθ-helicase DNA binding and microhomology-mediated end-joining. Nature Communications 16. Available from: https://doi.org/10.1038/s41467-025-58441-x
Jakowec N, Finkel S. 2025. Controlled burn: interconnections between energy-spilling pathways and metabolic signaling in bacteria. Journal of Bacteriology 207:e0054224. Available from: https://doi.org/10.1128/jb.00542-24
Jin L, Liu M, Cheng X. 2025. An acentrosomal aster with atypical microtubule polarity recruits cytokinesis signals to its center in Xenopus egg extracts. J Cell Sci 138:jcs263766. Available from: https://doi.org/10.1242/jcs.263766
Kamal M, Shishido SN, Mason J, Patel K, Manasanch EE, Orlowski RZ, Kuhn P. 2025. Single-cell proteomic analysis reveals Multiple Myeloma heterogeneity and the dynamics of the tumor immune microenvironment in precursor and advanced states. Neoplasia 66:101189. Available from: https://www.sciencedirect.com/science/article/pii/S1476558625000685
Kast DJ, Pulver C, Dines J, Dean M. 2025. Exploring Comparative Physiology and Evolution: Understanding Homologous Structures with Students. Current: The Journal of Marine Education 40. Available from: https://current-journal.com/articles/123
Khan S, Tyson AS, Ranjbar M, Zhang Z, Singh J, Han GW, Gati C. 2025. Structural snapshots capture nucleotide release at the μ-opioid receptor. Nature:1–9. Available from: https://www.nature.com/articles/s41586-025-09677-6
Knittel TL, Montgomery BE, Sprister RA, Magelky CN, Smith MJ, Soto-Ojeda M, Guthrie M, Phillips CM, Montgomery TA. 2025. Argonaute-siRNA loading via the RNA-binding protein RDE-4 in C. elegans. Curr Biol 35:5897–5907.e6. Available from: https://doi.org/10.1016/j.cub.2025.10.042
Lough-Stevens M, Ghione CR, Dean MD. 2025. The lifespan of corpora lutea in non-pregnant females is positively correlated with gestation length. Journal of Mammalogy:505–511.
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