Peer-reviewed publications: 

1. Bai, Y., Jones, M., Ojeda, L.S., Cuala, J., Cherchia, L., Georgia, S.K., Fraser, S.E., Truong, T.V. A Versatile Light Field Microscopy Platform for Multi-purpose Dynamic Volumetric Bio-imaging. bioRxiv (2024) (in revision). https://doi.org/10.1101/2024.09.30.615205

2. Luu, P., Nadtochiy, A., Zanon, M., Moreno, N., Messina, A., Petrazzini, M.E.M., Perez, J.V.T., Keomanee-Dizon, K., Jones, M., Brennan, C.H., Vallortigara, G., Fraser, S.E., Truong, T.V. Neural Basis of Number Sense in Larval Zebrafish. bioRxiv (2024) (in revision). https://doi.org/10.1101/2024.08.30.610552

3. Winter, C.M., Szekely, P., Popov, V., Belcher, H., Carter, R., Jones, M., Fraser, S.E., Truong, T.V., Benfey, P.N. SHR and SCR coordinate root patterning and growth early in the cell cycle. Nature 626, 611–616. https://doi.org/10.1038/s41586-023-06971-z (2024).

4. Nadtochiy, A., Luu, P., Fraser, S.E., Truong, T.V. VoDEx: a Python library for time annotation and management of volumetric functional imaging data. Bioinformatics btad568. https://doi.org/10.1093/bioinformatics/btad568 (2023).

5. Wang, P., Kitano, M., Keomanee-Dizon, K., Truong, T.V., Fraser, S.E., Cutrale, F. A single-shot hyperspectral phasor camera for fast, multi-color fluorescence microscopy. Cell Reports Methods 3, 100441. https://doi.org/10.1016/j.crmeth.2023.100441 (2023).

6. Djenoune, L., Mahamdeh, M., Truong, T.V., Nguyen, C.T., Fraser, S.E., Brueckner, M., Howard, J., Yuan, S.. Cilia function as calcium-mediated mechanosensors that instruct left-right asymmetry. Science 379, 71–78. https://doi.org/10.1126/science.abq7317 (2023).

7. Messina, A., Potrich, D., Perrino, M., Sheardown, E., Miletto Petrazzini, M.E., Luu, P., Nadtochiy, A., Truong, T.V., Sovrano, V.A., Fraser, S.E., Brennan, C.H., Vallortigara, G. Quantity as a Fish Views It: Behavior and Neurobiology. Frontiers in Neuroanatomy 16 (2022).

8. Dempsey, W.P., Du, Z., Nadtochiy, A., Smith, C.D., Czajkowski, K., Andreev, A., Robson, D.N., Li, J.M., Applebaum, S., Truong, T.V., Kesselman, C., Fraser, S.E., Arnold, D.B., 2022. Regional synapse gain and loss accompany memory formation in larval zebrafish. PNAS 119 (2022).

9. Keomanee-Dizon, K., Jones, M., Luu, P., Fraser, S.E., Truong, T.V. Extended depth-of-field light-sheet microscopy improves imaging of large volumes at high numerical aperture. Appl. Phys. Lett. 121, 163701 (2022).

10. Madaan, S.*, Keomanee-Dizon, K.*, Jones, M., Zhong, C., Nadtochiy, A., Luu, P., Fraser, S.E., Truong, T.V. Single-objective selective-volume illumination microscopy enables high-contrast light-field imaging. Optics Letters 46, 2860–2863 (2021).

11. Keomanee-Dizon, K., Fraser, S.E., Truong, T.V. A versatile twin-microscope system for light-sheet imaging. Review of Scientific Instruments 91, 053703 (2020).

12. Truong, T.V.* (shared corresponding authorship), Holland, D.B.*, Madaan, S*, Andreev, A., Keomanee-Dizon, K., Troll, J.V., Koo, D.E.S, McFall-Ngai, M., Fraser, S.E. (shared corresponding authorship). Selective volume illumination microscopy offers synchronous volumetric imaging with high contrast. Communications Biology 3, 74 (2020).

13. Nadeau, J.L., Schadegg, M., Hanczarek, I., Serabyn, E., Liewer, K., Truong, T., Lindensmith, C.A., Fraser, S., 2019. A Portable, Robust Light Field Microscope for Field and Flight Applications, in: The Astrobiology Science Conference (AbSciCon) pp. 211–8 (2019).

14. Lee, D.A., Andreev, A., Truong, T.V., Chen, A., Hill, A.J., Oikonomou, G., Pham, U., Hong, Y.K., Tran, S., Glass, L., Sapin, V., Engle, J., Fraser, S.E., Prober, D.A. Genetic and neuronal regulation of sleep by neuropeptide VF. eLife 6:e25727 (2017).

15. Bower, D.V., Lansdale, N., Navarro, S., Truong, T.V., Bower, D.J., Featherstone, N.C., Connell, M.G., Alam, D.A., Frey, M.R., Trinh, L.A., Fernandez, G.E., Warburton, D., Fraser, S.E., Bennett, D., Jesudason, E.C. Serca directs cell migration and branching across species and germ layers. Biology Open 6, 1458-1471 (2017).

16. Dempsey, W.P., Georgieva, L., Helbling, P.M., Sonay, A.Y., Truong, T.V., Haffner, M., Pantazis, P. In vivo single cell labeling by confined primed conversion. Nature Methods, Vol. 12, 645 (2015).

17. Li, Y., Trivedi, V., Truong, T.V., Koos, D.S., Lansford, R., Chuong, C.M., Warburton, D., Moats, R.A., Fraser, S.E. Dynamic analyses of the growth plate cartilage provide novel insights into skeletal morphogenesis. Nature Communications, Vol. 6, article number 6798 (2015).

18. Trivedi, V.*, Truong, T.V.*, Holland, D.B., Trinh, L.A., Liebling, M., Fraser, S.E. Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy retrospective registration. Biomedical Optics Express, Vol. 6(6), 2056-2066 (2015).

19. Reeves, G.T.*, Trisnadi, N.*, Truong, T.V., Nahmad, M., Katz, S., Stathopoulos, A. Dorsal-ventral gene expression in the Drosophila embryo reflects the dynamics and of the Dorsal nuclear gradient. Developmental Cell, Vol. 22, 544 (2012).

20. Supatto, W., Truong, T.V., Débarre, D., Beaurepaire, E. Advances in multiphoton microscopy for imaging embryos. Current Opinion in Genetics & Development, Developmental mechanisms, patterning and evolution 21, 538–548 (2011).

21. Truong, T.V.* (shared corresponding authorship), Supatto, W.*, Koos, D.S., Choi, J.M., Fraser, S.E. (shared corresponding authorship). Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods, Vol. 8, 757 (2011).

22. Truong, T.V., Supatto, W. Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis. Genesis 49, 555–569 (2011).

23. Truong, T.V., Shen, Y.R. Resonance-Enhanced Optical Reorientation of Molecules in Liquids via Intermolecular Interaction. Physical Review Letters, Vol. 99, 187802 (2007).

24. Truong, T.V., Chen, C.-Y., Tabiryan, N.V., Shen, Y.R. Phase Transition Induced by Two- Photon Absorption in Azobenzene Liquid Crystals. Journal of the Optical Society of America B, Vol. 24, 2623 (2007).

25. Truong, T.V., Xu, L., Shen, Y.R. Dynamics of guest-host orientational interaction in dye-doped liquid crystalline materials. Physical Review E, Vol. 72, 051709 (2005).

26. Truong, T.V., Shen, Y.R. Novel method for selective probing of ground-state rotational dynamics of solutes in solvents. Journal of Chemical Physics, Vol. 122, 091104 (2005).

27. Truong, T.V., Xu, L., Shen, Y.R. Early Dynamics of Guest-Host Interaction in Dye-Doped Liquid Crystalline Materials. Physical Review Letters, Vol. 90, 193902 (2003).

28. Levine, H., Aranson, I., Tsimring, L., Truong, T.V. Positive genetic feedback governs cAMP spiral wave formation in Dictyostelium. PNAS 93, 6382–6386 (1996).

Patents:

1. Thai V. Truong, Kevin Keomanee-Dizon, Scott E. Fraser, “Optimized photon collection for light-sheet microscopy”. Published patent publication number: US 12,411,088 B2.

2. Thai V. Truong, Sara Madaan, Daniel B. Holland, Scott E. Fraser, “Optimized volumetric imaging with selective volume illumination and light field detection”. Published patent publication number: US 20,190,064,493 A1.

3. Thai V. Truong, John M Choi, Scott E. Fraser, Willy Supatto, David S. Koos. “Multiple-photon excitation light sheet illumination microscope”. Published patent publication number: US 8441633 B2.

4. Thai V. Truong, John M Choi, Scott E. Fraser, Willy Supatto, David S. Koos, “Dual-mode raster point scanning/light sheet illumination microscope”. Published patent publication number: US 8570649 B2.

5. Periklis Pantazis, William P. Dempsey, Thai V. Truong, Scott E. Fraser, Lada Georgieva, “Method and device to achieve spatially confined photointeraction at the focal volume of a microscope”. Published patent publication number: US 20160054553 A1.

6. John M. Choi, Thai V. Truong, David S. Koos, “Simultaneous orthogonal light sheet microscopy and computed optical tomography”. Published patent publication number: US8575570 B2.

7. Sameer S. Walavalkar, Andrew P. Homyk, William M. Jones, Axel Scherer, Scott Fraser, Thai V. Truong, “Optical sensor for analyte detection”. Published patent publication number: US 2014/0099732 A1.