{"id":195,"date":"2023-07-05T13:12:41","date_gmt":"2023-07-05T20:12:41","guid":{"rendered":"https:\/\/live-usc-dornsife.pantheonsite.io\/pombenet\/?page_id=195"},"modified":"2023-08-06T20:46:37","modified_gmt":"2023-08-07T03:46:37","slug":"pombex","status":"publish","type":"page","link":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/","title":{"rendered":"Pombe X"},"content":{"rendered":"\n      \n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--link-list \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--link-list\"\n    \n      >\n\n    \n      <div class=\"header-container\">\n\n                        \n<div class=\"f--field f--description\">\n\n    \n  <p>PombeX is software (MatLab) for robust segmentation of fission yeast micrographs, especially those with quality-challenged images. The reference is:<\/p>\n<p>Peng JY, Chen YJ, Green MD, Sabatinos SA, Forsburg SL, Hsu CN. (2013) PombeX: robust cell segmentation for fission yeast transillumination images. <a href=\"https:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0081434\">PLoS One. Dec 6;8(12):e81434<\/a>. doi:10.1371\/journal.pone.0081434. eCollection 2013.<\/p>\n\n\n\n<\/div>\n          <\/div>\n  \n      <div class=\"links-container\">\n\n                        \n        \n          \n            <div class=\"column\">\n                <ul>\n                                                                  <li>\n                                \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= \/pombenet\/\n    aria-label=\"Read more about PombeX 1.0a (Windows 32-bit)\"  \n>\n    PombeX 1.0a (Windows 32-bit) \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n                                                    <\/li>\n                                                                                        <li>\n                                \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= \/pombenet\/\n    aria-label=\"Read more about PombeX 1.0a (Windows 64-bit)\"  \n>\n    PombeX 1.0a (Windows 64-bit) \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n                                                    <\/li>\n                                                          <\/ul>\n            <\/div>\n\n          \n          \n        \n          \n            <div class=\"column\">\n                <ul>\n                                                                  <li>\n                                \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= \/pombenet\/\n    aria-label=\"Read more about Test data\"  \n>\n    Test data \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n                                                    <\/li>\n                                                          <\/ul>\n            <\/div>\n\n          \n          \n        \n\n\n\n    <\/div>\n  \n\n  <\/div><\/div>\n\n\n\n    \n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--link-list \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--link-list\"\n    \n      >\n\n    \n      <div class=\"header-container\">\n\n                        \n<div class=\"f--field f--description\">\n\n    \n  <p>All software developed on MATLAB R2010b. For computers without MATLAB or with an earlier version, please download and install the following MCRInstaller:<\/p>\n\n\n\n<\/div>\n          <\/div>\n  \n      <div class=\"links-container\">\n\n                        \n        \n          \n            <div class=\"column\">\n                <ul>\n                                                                  <li>\n                                \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= \/pombenet\/\n    aria-label=\"Read more about MCRInstaller (Windows 32-bit)\"  \n>\n    MCRInstaller (Windows 32-bit) \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n                                                    <\/li>\n                                                          <\/ul>\n            <\/div>\n\n          \n          \n        \n          \n            <div class=\"column\">\n                <ul>\n                                                                  <li>\n                                \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= \/pombenet\/\n    aria-label=\"Read more about MCRInstaller (Windows 64-bit)\"  \n>\n    MCRInstaller (Windows 64-bit) \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n                                                    <\/li>\n                                                          <\/ul>\n            <\/div>\n\n          \n          \n        \n\n\n\n    <\/div>\n  \n\n  <\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":354,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-195","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.1.1 - https:\/\/yoast.com\/product\/yoast-seo-wordpress\/ -->\n<title>Pombe X - PombeNet Forsburg Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Pombe X - PombeNet Forsburg Lab\" \/>\n<meta property=\"og:url\" content=\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/\" \/>\n<meta property=\"og:site_name\" content=\"PombeNet Forsburg Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2023-08-07T03:46:37+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/\",\"url\":\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/\",\"name\":\"Pombe X - PombeNet Forsburg Lab\",\"isPartOf\":{\"@id\":\"https:\/\/dornsife.usc.edu\/pombenet\/#website\"},\"datePublished\":\"2023-07-05T20:12:41+00:00\",\"dateModified\":\"2023-08-07T03:46:37+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/dornsife.usc.edu\/pombenet\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Pombe X\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/dornsife.usc.edu\/pombenet\/#website\",\"url\":\"https:\/\/dornsife.usc.edu\/pombenet\/\",\"name\":\"PombeNet Forsburg Lab\",\"description\":\"USC Dornsife PombeNet Forsburg Lab\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/dornsife.usc.edu\/pombenet\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Pombe X - PombeNet Forsburg Lab","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/","og_locale":"en_US","og_type":"article","og_title":"Pombe X - PombeNet Forsburg Lab","og_url":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/","og_site_name":"PombeNet Forsburg Lab","article_modified_time":"2023-08-07T03:46:37+00:00","twitter_card":"summary_large_image","schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/","url":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/","name":"Pombe X - PombeNet Forsburg Lab","isPartOf":{"@id":"https:\/\/dornsife.usc.edu\/pombenet\/#website"},"datePublished":"2023-07-05T20:12:41+00:00","dateModified":"2023-08-07T03:46:37+00:00","breadcrumb":{"@id":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/dornsife.usc.edu\/pombenet\/pombex\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/dornsife.usc.edu\/pombenet\/pombex\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/dornsife.usc.edu\/pombenet\/"},{"@type":"ListItem","position":2,"name":"Pombe X"}]},{"@type":"WebSite","@id":"https:\/\/dornsife.usc.edu\/pombenet\/#website","url":"https:\/\/dornsife.usc.edu\/pombenet\/","name":"PombeNet Forsburg Lab","description":"USC Dornsife PombeNet Forsburg Lab","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/dornsife.usc.edu\/pombenet\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"}]}},"_links":{"self":[{"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/pages\/195","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/users\/354"}],"replies":[{"embeddable":true,"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/comments?post=195"}],"version-history":[{"count":5,"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/pages\/195\/revisions"}],"predecessor-version":[{"id":778,"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/pages\/195\/revisions\/778"}],"wp:attachment":[{"href":"https:\/\/dornsife.usc.edu\/pombenet\/wp-json\/wp\/v2\/media?parent=195"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}