{"id":371,"date":"2023-07-07T23:32:22","date_gmt":"2023-07-08T06:32:22","guid":{"rendered":"https:\/\/dornsife.usc.edu\/nlab\/?page_id=371"},"modified":"2025-09-24T15:43:39","modified_gmt":"2025-09-24T22:43:39","slug":"publications","status":"publish","type":"page","link":"https:\/\/dornsife.usc.edu\/nlab\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n\n                                                                        \n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--stacking-cards \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--stacking-cards\"\n    \n      >\n\n    \n            <div class=\"header-container\">\n            \n                                \n<div class=\"f--field f--description\">\n\n    \n  <p>*last updated September 2025<\/p>\n\n\n\n<\/div>\n                    <\/div>\n    \n            <div class=\"cards-container\">\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2025\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li><strong>DeWeese, K.<\/strong>, <strong>Molano, G.<\/strong>, Calhoun, S., Lipzen, A., Jenkins, J., Williams, M., Plott, C., Talag, J., Grimwood, J., Jannink, J.-L., Grigoriev, I.V., Schmutz, J., Yarish, C., <strong>Nuzhdin, S.V.<\/strong>\u00a0and Lindell, S. (2025) \u201cScaffolded and annotated nuclear and organelle genomes of the North American brown alga <em>Saccharina latissima<\/em>,\u201d <em>Frontiers in Genetics<\/em>, 16. doi: <a href=\"http:\/\/doi.org\/10.3389\/fgene.2025.1494480\">10.3389\/fgene.2025.1494480<\/a><\/li>\n<li><strong>Diesel, J.F.<\/strong>, <strong>Molano, G.<\/strong> and <strong>Nuzhdin, S.V.<\/strong> (2025) \u201cThe mutation atlas of giant kelp (<em>Macrocystis pyrifera<\/em>): a mutation database resource for natural knockouts,\u201d <em>Frontiers in Plant Science<\/em>, 15. doi: <a href=\"http:\/\/doi.org\/10.3389\/fpls.2024.1338572\">10.3389\/fpls.2024.1338572<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2024\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Ithnin, M., Vu, W.T., Marjuni, M., Amiruddin, M.D., <strong>Singh, A.<\/strong>, <strong>Suryawanshi, V.<\/strong>, Serdari, N.M., Mohd Zaki, N., <strong>Nuzhdin, S.V.<\/strong>, <strong>Chang, P.L.<\/strong> and Singh, R. (2024) \u201c<em>Elaeis<\/em> species specific SNPs allow authentication of natural hybrids in a wild <em>E. oleifera<\/em> germplasm collection,\u201d <em>Biocatalysis and Agricultural Biotechnology<\/em>, 60. doi: <a href=\"http:\/\/doi.org\/10.1016\/j.bcab.2024.103304\">10.1016\/j.bcab.2024.103304<\/a><\/li>\n<li><strong>Harden, M.<\/strong>, <strong>Kovalev, M.<\/strong>, <strong>Molano, G.<\/strong>, Yorke, C., Miller, R., Reed, D., Alberto, F., Koos, D.S., Lansford, R. and <strong>Nuzhdin, S.V.<\/strong> (2024) \u201cHeat stress analysis suggests a genetic basis for tolerance in Macrocystis pyrifera across developmental stages,\u201d <em>Communications Biology<\/em>, 7(1). doi: <a href=\"http:\/\/doi.org\/10.1038\/s42003-024-06800-7\">10.1038\/s42003-024-06800-7<\/a><\/li>\n<li><strong>Tolentino, B.<\/strong> and <strong>Nuzhdin, S.V.<\/strong>\u00a0(2024) \u201cEight complete genome sequences of bacteria isolated from laboratory stock of giant kelp gametophytes,\u201d <em>Microbiology Resource Announcements<\/em>. 13(4), doi: <a href=\"http:\/\/doi.org\/10.1128\/MRA.00984-23\">10.1128\/MRA.00984-23<\/a><\/li>\n<li><strong>Osborne, M.G.<\/strong>, <strong>Simons, A.L.<\/strong>, <strong>Molano, G.<\/strong>, <strong>Tolentino, B.<\/strong>, <strong>Singh, A.<\/strong>, Arismendi, G.J.M., Alberto, F. and <strong>Nuzhdin, S.V.<\/strong> (2024) \u201cInvestigating the relationship between microbial network features of giant kelp \u2018seedbank\u2019 cultures and subsequent farm performance,\u201d <em>PLOS ONE<\/em>. 19(3). <a href=\"http:\/\/doi.org\/10.1371\/journal.pone.0295740\">10.1371\/journal.pone.0295740<\/a><\/li>\n<li>Vissers, C.,\u00a0Lindell, S.R., <strong>Nuzhdin, S.V.<\/strong>, Almada, A.A. and Timmermans, K. (2024) \u201cUsing sporeless sporophytes as a next step towards upscaling offshore kelp cultivation,\u201d Journal of Applied Phycology, 36(1), pp. 313\u2013320. doi: <a href=\"http:\/\/doi.org\/10.1007\/s10811-023-03123-8\">10.1007\/s10811-023-03123-8<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2023\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li><span style=\"font-weight: 400;\">Lin YP, Chen HW, Yeh PM, Anand SS, Lin J, Li J, Noble T, Nair R, Schafleitner R, Samsonova M, Bishop-von-Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Ting CT, Lawn RJ, Lee CR. Demographic history and distinct selection signatures of two domestication genes in mungbean: <\/span><i><span style=\"font-weight: 400;\">Plant Physiology<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/academic.oup.com\/plphys\/advance-article-pdf\/doi\/10.1093\/plphys\/kiad356\/50838188\/kiad356.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><strong>Diesel, J.<\/strong>, <strong>Molano, G.<\/strong>, Montecinos, G.J., <strong>DeWeese, K.<\/strong>, Calhoun, S., Kuo, A., Lipzen, A., Salamov, A., Grigoriev, I.V., Reed, D.C., Miller, R.J., <strong>Nuzhdin, S.V.<\/strong> and Alberto, F. (2023) \u201cA scaffolded and annotated reference genome of giant kelp (<em>Macrocystis pyrifera<\/em>),\u201d <em>BMC Genomics<\/em>, 24(1). doi: <a href=\"http:\/\/doi.org\/10.1186\/s12864-023-09658-x\">10.1186\/s12864-023-09658-x<\/a><\/li>\n<li><span style=\"font-weight: 400;\">Igolkina AA, Noujdina NV, Vishnyakova M, Longcore T, von Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova MG. Historical routes for diversification of domesticated chickpea inferred from landrace genomics: <\/span><i><span style=\"font-weight: 400;\">Molecular Biology and Evolution<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/academic.oup.com\/mbe\/article-pdf\/40\/6\/msad110\/50667451\/msad110.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Ong PW, Lin YP, Chen HW, Lo CY, Burlyaeva M, Noble T, Nair RM, Schafleitner R, Vishnyakova M, Bishop-von-Wettberg E, Samsonova MG, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Ting CT, Lee CR. Environment as a limiting factor of the historical global spread of mungbean: <\/span><i><span style=\"font-weight: 400;\">eLife<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC10299821\/pdf\/elife-85725.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Hua Z<\/b><span style=\"font-weight: 400;\">, <\/span><b>Churches N<\/b><span style=\"font-weight: 400;\">, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Balancing selection and candidate loci for survival and growth during larval development in the Mediterranean mussel,<\/span><i><span style=\"font-weight: 400;\"> Mytilus galloprovincialis<\/span><\/i><span style=\"font-weight: 400;\">: <\/span><i><span style=\"font-weight: 400;\">G3: Genes, Genomes, Genetics<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/academic.oup.com\/g3journal\/advance-article-pdf\/doi\/10.1093\/g3journal\/jkad103\/50738644\/jkad103.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Nanni AV, Martinez N, Graze R, Morse A, Newman JR, Jain V, <\/span><b>Vlaho S,<\/b> <b>Signor S<\/b><span style=\"font-weight: 400;\">, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Renne R, McIntyre LM. Sex-Biased Expression Is Associated With Chromatin State in <\/span><i><span style=\"font-weight: 400;\">Drosophila melanogaster<\/span><\/i><span style=\"font-weight: 400;\"> and <\/span><i><span style=\"font-weight: 400;\">Drosophila simulans<\/span><\/i><span style=\"font-weight: 400;\">: <\/span><i><span style=\"font-weight: 400;\">Molecular Biology and Evolution<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/academic.oup.com\/mbe\/article-pdf\/40\/5\/msad078\/50275705\/msad078.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Lin M, <\/span><b>Simons AL<\/b><span style=\"font-weight: 400;\">, Harrigan RJ, Curd EE, Schneider FD, Ruiz\u2010Ramos DV, Gold Z, <\/span><b>Osborne MG<\/b><span style=\"font-weight: 400;\">, Shirazi S, Schweizer TM, Moore TN. Landscape analyses using eDNA metabarcoding and Earth observation predict community biodiversity in California: <\/span><i><span style=\"font-weight: 400;\">Ecological Applications<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/esajournals.onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/eap.2379\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Osborne MG<\/b><span style=\"font-weight: 400;\">, <\/span><b>Molano G<\/b><span style=\"font-weight: 400;\">, <\/span><b>Simons AL<\/b><span style=\"font-weight: 400;\">, Dao V, <\/span><b>Ong B<\/b><span style=\"font-weight: 400;\">, <\/span><b>Vong B<\/b><span style=\"font-weight: 400;\">, <\/span><b>Singh A<\/b><span style=\"font-weight: 400;\">, Montecinos Arismendi GJ, Alberto F, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Natural variation of <\/span><i><span style=\"font-weight: 400;\">Macrocystis pyrifera <\/span><\/i><span style=\"font-weight: 400;\">gametophyte germplasm culture microbiomes and applications for improving yield in offshore farms. Journal of Phycology. 2023. [<\/span><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/jpy.13320\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Simons AL<\/b><span style=\"font-weight: 400;\">, Theroux S, <\/span><b>Osborne M<\/b><span style=\"font-weight: 400;\">, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Mazor R, Steele J. Zeta diversity patterns in metabarcoded lotic algal assemblages as a tool for bioassessment: <\/span><i><span style=\"font-weight: 400;\">Ecological Applications<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/esajournals.onlinelibrary.wiley.com\/doi\/pdf\/10.1002\/eap.2812\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Gretsova M, Surkova S, Kanapin A, Samsonova A, Logacheva M, Shcherbakov A, Logachev A, Bankin M, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M. Transcriptomic Analysis of Flowering Time Genes in Cultivated Chickpea and Wild <\/span><i><span style=\"font-weight: 400;\">Cicer<\/span><\/i><span style=\"font-weight: 400;\">: <\/span><i><span style=\"font-weight: 400;\">International Journal of Molecular Sciences<\/span><\/i><span style=\"font-weight: 400;\">. 2023. [<\/span><a href=\"https:\/\/www.mdpi.com\/1422-0067\/24\/3\/2692\/pdf?version=1675158374\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2022\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li><span style=\"font-weight: 400;\">Xu R, Martelossi J, Smits M, Iannello M, Peruzza L, Babbucci M, Milan M, Dunham JP, Breton S, Milani L, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Multi-tissue RNA-Seq analysis and long-read-based genome assembly reveal complex sex-specific gene regulation and molecular evolution in the Manila clam: <\/span><i><span style=\"font-weight: 400;\">Genome Biology and Evolution<\/span><\/i><span style=\"font-weight: 400;\">. 2022. [<\/span><a href=\"https:\/\/academic.oup.com\/gbe\/article-pdf\/14\/12\/evac171\/48467217\/evac171.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Bavykina M, Kostina N, Lee CR, Schafleitner R, Bishop-von Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M, Gursky V, Kozlov K. Modeling of Flowering Time in <\/span><i><span style=\"font-weight: 400;\">Vigna radiata<\/span><\/i><span style=\"font-weight: 400;\"> with Artificial Image Objects, Convolutional Neural Network and Random Forest: <\/span><i><span style=\"font-weight: 400;\">Plants<\/span><\/i><span style=\"font-weight: 400;\">. 2022. [<\/span><a href=\"https:\/\/www.mdpi.com\/2223-7747\/11\/23\/3327\/pdf?version=1669889812\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Courcoubetis G, Xu C, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Haas S. Avalanches during epithelial tissue growth; Uniform Growth and a drosophila eye disc model: <\/span><i><span style=\"font-weight: 400;\">PLoS Computational Biology<\/span><\/i><span style=\"font-weight: 400;\">. 2022. [<\/span><a href=\"https:\/\/journals.plos.org\/ploscompbiol\/article\/file?id=10.1371\/journal.pcbi.1009952&amp;type=printable\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Molano G<\/b><span style=\"font-weight: 400;\">, <\/span><b>Diesel J<\/b><span style=\"font-weight: 400;\">, Montecinos GJ, Alberto F, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Sporophyte stage genes exhibit stronger selection than gametophyte stage genes in haplodiplontic giant kelp: <\/span><i><span style=\"font-weight: 400;\">Frontiers in Marine Science<\/span><\/i><span style=\"font-weight: 400;\">. 2022. [<\/span><a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fmars.2021.774076\/pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Lin YP, Chen HW, Yeh PM, Lin J, Anand S, Li J, Noble T, Nair RM, Schafleitner R, Samsonova M, Bishop-von-Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Ting CT, Lawn RJ, Lee CR. Distinct selection signatures during domestication and improvement in crops: a tale of two genes in mungbean: <\/span><i><span style=\"font-weight: 400;\">BioRxiv<\/span><\/i><span style=\"font-weight: 400;\">. 2022. [<\/span><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2022.09.08.506689v1.full.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2021\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li><b>DeWeese KJ<\/b><span style=\"font-weight: 400;\">,<\/span><b> Osborne MG<\/b><span style=\"font-weight: 400;\">. Understanding the metabolome and metagenome as extended phenotypes: The next frontier in macroalgae domestication and improvement: <\/span><i><span style=\"font-weight: 400;\">Journal of the World Aquaculture Society<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/onlinelibrary.wiley.com\/doi\/pdf\/10.1111\/jwas.12782\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Sherbina K<\/b><span style=\"font-weight: 400;\">, Le\u00f3n-Novelo LG, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, McIntyre LM, Marroni F. Power calculator for detecting allelic imbalance using hierarchical Bayesian model: <\/span><i><span style=\"font-weight: 400;\">BMC Research Notes<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/bmcresnotes.biomedcentral.com\/counter\/pdf\/10.1186\/s13104-021-05851-x.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Ageev A, Lee CR, Ting CT, Schafleitner R, Bishop-von Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M, Kozlov K. Modeling of Flowering Time in <\/span><i><span style=\"font-weight: 400;\">Vigna radiata<\/span><\/i><span style=\"font-weight: 400;\"> with Approximate Bayesian Computation: <\/span><i><span style=\"font-weight: 400;\">Agronomy<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/www.mdpi.com\/2073-4395\/11\/11\/2317\/pdf?version=1637849309\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Shin MG<\/b><span style=\"font-weight: 400;\">, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Interspecific Sample Prioritization Can Improve QTL Detection With Tree-Based Predictive Models: <\/span><i><span style=\"font-weight: 400;\">Frontiers in Genetics<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/www.frontiersin.org\/articles\/10.3389\/fgene.2021.684882\/pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Surkova S, G\u00f6rne J, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M. Interplay between sex determination cascade and major signaling pathways during Drosophila eye development: Perspectives for future research: <\/span><i><span style=\"font-weight: 400;\">Developmental Biology<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC8172476\/pdf\/nihms-1689209.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Ageev A, Aydogan A, Bishop-von Wettberg E, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M, Kozlov K. Simulation Model for Time to Flowering with Climatic and Genetic Inputs for Wild Chickpea: <\/span><i><span style=\"font-weight: 400;\">Agronomy<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/www.mdpi.com\/2073-4395\/11\/7\/1389\/pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Gretsova M, Surkova S, Kanapin A, Samsonova A, Scherbakov A, Logacheva M, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova M. Transcriptomic analysis of flowering-time genes in wild and cultivated chickpea: <\/span><i><span style=\"font-weight: 400;\">PlantGen2021<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/conf.icgbio.ru\/plantgen2021\/wp-content\/uploads\/sites\/4\/2021\/06\/Poster_Surkova_S_Yu.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><b>Churches N<\/b><span style=\"font-weight: 400;\">, <\/span><b>Chancellor J<\/b><span style=\"font-weight: 400;\">, Chang P,<\/span><b> Nuzhdin S<\/b><span style=\"font-weight: 400;\">. Pacific oysters (<\/span><i><span style=\"font-weight: 400;\">Crassostrea gigas<\/span><\/i><span style=\"font-weight: 400;\">) dramatically recalibrate the model for the upper limit of the eukaryotic mutation rate: <\/span><i><span style=\"font-weight: 400;\">The Society for Integrative and Comparative Biology 2021 Virtual Annual Meeting<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/sicb.org\/abstracts\/pacific-oysters-crassostrea-gigas-dramatically-recalibrate-the-model-for-the-upper-limit-of-the-eukaryotic-mutation-rate\/\"><span style=\"font-weight: 400;\">Abstract<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Ithnin M, Vu WT, <\/span><b>Shin M<\/b><span style=\"font-weight: 400;\">,<\/span><b> Suryawanshi V<\/b><span style=\"font-weight: 400;\">, <\/span><b>Sherbina K<\/b><span style=\"font-weight: 400;\">, Zolkafli SH, Serdari NM, Amiruddin MD, Abdullah N, Mustaffa S, Marjuni M, Nookiah R, Kushairi A, Marjoram P, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Chang PL, Singh R: Genomic diversity and genome-wide association analysis related to yield and fatty acid composition of wild American oil palm. <\/span><i><span style=\"font-weight: 400;\">Plant Science<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ithnin_2020.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Igolkina AA, Noujdina NV, Samsonova MG, von Wettberg E, Longcore T, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">. Historical trade routes for diversification of domesticated chickpea inferred from landrace genomics: <\/span><i><span style=\"font-weight: 400;\">bioRxiv<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2021.01.27.428389v1.full.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Ageev AY, Bishop-von Wettberg EJ, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova MG, Kozlov KN. Forecasting the Timing of Floral Initiation in Wild Chickpeas under Climate Change: <\/span><i><span style=\"font-weight: 400;\">Biophysics<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/link.springer.com\/content\/pdf\/10.1134\/S0006350921010152.pdf\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li><span style=\"font-weight: 400;\">Sokolkova AB, Bulyntsev SV, Chang PL, Carrasquila-Garcia N, Cook DR, von Wettberg E, Vishnyakova MA, <\/span><b>Nuzhdin SV<\/b><span style=\"font-weight: 400;\">, Samsonova MG. A Genomic Analysis of Historic Chickpea Landraces: <\/span><i><span style=\"font-weight: 400;\">Biophysics<\/span><\/i><span style=\"font-weight: 400;\">. 2021. [<\/span><a href=\"https:\/\/drive.google.com\/file\/d\/1aqx4uEGsA5KFonfdKuQl_5j0bU2sezQB\/view\"><span style=\"font-weight: 400;\">PDF<\/span><\/a><span style=\"font-weight: 400;\">]<\/span><\/li>\n<li>Shin M, Ithnin M, Vu WT, Kamaruddin K, Chin T, Yaakub Z, Chang PL, Sritharan K,\u00a0<strong>Nuzhdin SV<\/strong>, Singh R: Association mapping analysis of oil palm interspecific hybrid populations and predicting phenotypic values via machine learning algorithms.\u00a0<em>Plant Breeding<\/em>, 2021.<\/li>\n<li>Sokolkova AB, Bulyntsev SV, Chang PL, Carrasquila-Garcia N, Cook DR, von Wettberg E, Vishnyakova MA,\u00a0<strong>Nuzhdin SV<\/strong>, Samsonova M: The Search for Agroislands in the Chickpea Genome.\u00a0<em>Molecular Biophysics<\/em>, 2021. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Sokolkova_2021.pdf\">PDF<\/a>]\u00a0[<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA388691\">NCBI BioProject<\/a>]<\/li>\n<li>Chernova A, Gubaev R,\u00a0<strong>Singh A<\/strong>,\u00a0<strong>Sherbina K<\/strong>, Goryunova S, Martynova E, Goryunov D, Boldyrev S, Vanyushkina A, Anikanov N, Stekolshchikova E, Yushina E, Demurin Y, Mukhina Z, Gavrilova V, Anisimova I, Karabitsina Y, Alpatieva N, Chang PL, Khaitovich P, Mazin P,\u00a0<strong>Nuzhdin S<\/strong>: Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content.\u00a0<em>BMC Genomics<\/em>\u00a0in review. [<a href=\"https:\/\/uscdornsife.usc.edu\/wp-assets\/195\/Chernova_2021.pdf\">PDF<\/a>]<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2020\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Ithnin M, Vu WT, Shin M,\u00a0<strong>Suryawanshi V<\/strong>,\u00a0<strong>Sherbina K<\/strong>, Zolkafli SH, Serdari NM, Din M, Abdullah N, Mustaffa S, Marjuni M, Nookiah R, Kushairi A, Marjoram P,\u00a0<strong>Nuzhdin S<\/strong>, Chang PL, Singh R: Genomic diversity of wild American oil palm and evidence of selection acting on yield traits.\u00a0<em>Plant Sciences.\u00a0<\/em>2020. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ithnin_2020.pdf\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA434010\">NCBI BioProject<\/a>]<\/li>\n<li>Ting N-C,\u00a0<strong>Sherbina K<\/strong>, Khoo J-S, Kamaruddin K, Chan P-L, Chan K-L, Halim MAA, Sritharan K, Yaakub Z, Mayes S, Massawe F, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Sambanthamurthi R, Singh R: Expression of fatty acid and triacylglycerol synthesis genes in interspecific hybrids of oil palm.\u00a0<i>Scientific Reports,\u00a0<\/i>2020. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ting_2020.pdf\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA606124\">NCBI BioProject<\/a>]<\/li>\n<li>Sokolkova AB, Chang PL, Carrasquila-Garcia N, Noujdina NV, Cook DR,\u00a0<strong>Nuzhdin SV<\/strong>, Samsonova MG: The signatures of ecological adaptation in the genomes of chickpea landraces.\u00a0<em>Molecular Biophysics<\/em>, 2020. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Sokolkova_2020b.pdf\">PDF<\/a>]\u00a0[<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA388691\">NCBI BioProject<\/a>]<\/li>\n<li>Sokolkova A, Bulyntsev SV, Chang PL, Carrasquila-Garcia N, Igolkina A, Noujdina NV, von Wettberg E, Vishnyakova MA, Cook DR,\u00a0<strong>Nuzhdin SV<\/strong>, Samsonova MG: Genomic Analysis of Vavilov\u2019s Historic Chickpea Landraces Reveals Footprints of Environmental and Human Selection.\u00a0<em>International Journal of Molecular Sciences<\/em>, 2020. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Sokolkova_2020.pdf&quot;\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA388691\">NCBI BioProject<\/a>]<\/li>\n<li>Newell NR, Ray S, Dalton JE, Fortier JC, Kao JY, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Arbeitman MN.\u00a0The Drosophila Post-mating Response: Gene Expression and Behavioral Changes Reveal Perdurance and Variation in Cross-Tissue Interactions.\u00a0<em>G3<\/em>. 2020. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Newell_2020.pdf\">PDF<\/a>]<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2019\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Kozlov, K.,\u00a0<strong>Singh, A.<\/strong>, Berger, J.\u00a0et al.\u00a0Non-linear regression models for time to flowering in wild chickpea combine genetic and climatic factors.\u00a0BMC Plant Biol\u00a019,\u00a094 (2019). [<a href=\"https:\/\/bmcplantbiol.biomedcentral.com\/articles\/10.1186\/s12870-019-1685-2\" target=\"_blank\" rel=\"noopener\">PDF<\/a>]<\/li>\n<li>Sivasakthi K, Marques E, Kalungwana N, Carrasquilla-Garcia N, Chang PL, Bergmann E, Bueno E, Bosch C, Cook D, Cordeiro M, Udupa S, Mohammad I, Rouf RM, Vadez V, Vandemark G, Gaur P, von Wettberg E, Kholova J, Penmetsa RV: Functional dissection of the chickpea (Cicer arietinum L.) stay-green phenotype associated with molecular variation at an ortholog of Mendel\u2019s I gene for cotyledon color:\u00a0 implications for crop production and carotenoid biofortification. International Journal of Molecular Sciences, 2019, 20:5562, doi:10.3390\/ijms20225562. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Sivasakthi_2019.pdf\">PDF<\/a>]<\/li>\n<li><strong>Simons AL<\/strong>, Mazor R, Stein ED,\u00a0<strong>Nuzhdin S<\/strong>. Using alpha, beta, and zeta diversity in describing the health of stream-based benthic macroinvertebrate communities.\u00a0<em>Ecological Applications<\/em>. 2019. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Simons_2019.pdf\">PDF<\/a>]<\/li>\n<li>Greenlon A, Chang PL, Damtew ZM, Muleta A, Carrasquilla-Garcia N, Kim D, Nguyen HP,\u00a0<strong>Suryawanshi V<\/strong>, Krieg CP, Yadav SK, Patel JS, Mukherjee A, Udupa S, Benjelloun I, Thami-Alami I, Yasin M, Patil B, Singh S, Sarma BK, von Wettberg EJB, Kahraman A, Bukun B, Assefa F, Tesfaye K, Fikre A, Cook DR.\u00a0Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria.\u00a0<em>PNAS<\/em>. 2019. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Greenlon_2019.pdf\">PDF<\/a>]\u00a0[<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA453501\">NCBI BioProject<\/a>]<\/li>\n<li>Shin MG, Bulyntsev SV, Chang PL, Korbu LB, Carrasquila-Garcia N, Vishnyakova MA, Samsonova MG, Cook DR,\u00a0<strong>Nuzhdin SV<\/strong>.\u00a0Multi-trait analysis of domestication genes in Cicer arietinum &#8211; Cicer reticulatum hybrids with a multidimensional approach: Modeling wide crosses for crop improvement.\u00a0<em>Plant Sciences<\/em>. 2019.\u00a0[<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Shin_2019.pdf\">PDF<\/a>]\u00a0[<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA507624\">NCBI BioProject<\/a>]<\/li>\n<li>Fu S, Chang PL, Friesen ML, Teakle NL, Tarone AM, Sze S-H. Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.\u00a0<em>BMC Genomics<\/em>. 2019. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Fu_2019.pdf\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA185437\">NCBI BioProject1<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA185444\">NCBI BioProject2<\/a>]<\/li>\n<li>Zubair A, Rosen IG,\u00a0<strong>Nuzhdin SV<\/strong>, Marjoram P. Bayesian model selection for the gap gene network.\u00a0<em>BMC Bioinformatics<\/em>.\u00a02019.<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2018\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Ghiselli F, Iannello M, Puccio G, Chang PL, Plazzi F,\u00a0<strong>Nuzhdin SV<\/strong>, Passamonti M. Comparative transcriptomics in two bivalve species offers different perspectives on the evolution of sex-biased genes.\u00a0<em>Genome Biology Evolution<\/em>. 2018.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ghiselli_2018.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170478\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li><strong>Simons A, Churches N, Nuzhdin S<\/strong>. High turnover of gut microbiome from algal feedstock experimental manipulations in the Pacific oyster (Crassostrea gigas).\u00a0<em>Microbial Biotechnology<\/em>. 2018.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Simons_2018.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/416146\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>von Wettberg EJB, Chang PL, Basdemir F, Carrasquilla-Garcia N, Balcha L, Moenga S, Sefara G, Greenlon A, Moriuchi K,\u00a0<strong>Singh V<\/strong>, Cordeiro M, Noujdina N,\u00a0Dinegde K,\u00a0Sani S,\u00a0Getahun T,\u00a0Vance L,\u00a0Bergmann E,\u00a0Lindsay D,\u00a0Mamo BE,\u00a0Warschefsky E,\u00a0Dacosta-Calheiros E,\u00a0Marques E,\u00a0Yilmaz M,\u00a0Cakmak A,\u00a0Rose J,\u00a0Migneault A,\u00a0Krieg C,\u00a0Saylak S,\u00a0Temel H,\u00a0Friesen M,\u00a0Siler E,\u00a0Akhmetov Z,\u00a0Ozelik H,\u00a0Khalova J,\u00a0Jan C,\u00a0Gaur P,\u00a0Yildirin M,\u00a0Sharma H,\u00a0Vadez V,\u00a0Tesfaye K,\u00a0Woldemedhin A,\u00a0Bunyamin T,\u00a0Aydogan A,\u00a0 Bukun B,\u00a0Penmetsa RV,\u00a0Berger J,\u00a0Kahraman A,\u00a0<strong>Nuzhdin S<\/strong>,\u00a0Cook DR.\u00a0Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation.\u00a0<em>Nature Communications<\/em>. 2018.\u00a0<a href=\"https:\/\/uscdornsife.usc.edu\/wp-assets\/vonWettberg_2018.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/416006\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2017\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Zhigunov AV, Ulianich PS, Lebedeva MV, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Potokina EK. Development of F1 hybrid population and the high-density linkage map for European aspen (Populus tremula L.) using RADseq technology.\u00a0<em>BMC Plant Biology<\/em>. 2017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Zhigunov_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/395596\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Kahraman A, Pandey A, Khan MK, Lindsay D, Moenga S, Vance L, Bergmann E, Carrasquilla-Garcia N, Shin M, Chang PL, von Wettberg E, Tar\u2019an B, Cook DR, Penmetsa RV: Distinct subgroups of Cicer echinospermum, a crop wild relative from the secondary gene pool, are associated with hybrid sterility and hybrid breakdown in interspecific crosses with cultivated chickpea.\u00a0<i>Crop Science,<\/i>\u00a02017, 57:3101\u20133111, doi:10.2135\/cropsci2017.06.0335. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Kahraman_2017.pdf\">PDF<\/a>]<\/li>\n<li>Sani SGAS, Chang PL, Zubair A, Munis MFH, Carrasquilla-Garcia N, Cordeiro M, Penmetsa RV,\u00a0<strong>Nuzhdin SV<\/strong>, Cook DR, von Wettberg EJB. Genetic diversity, population structure, and genetic correlation with climatic variation in Chickpea (Cicer arietinum) landraces from Pakistan.\u00a0<i>The Plant Genome.<\/i>\u00a02017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Sani_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/396092\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Gursky VV, Kozlov KN, Kulakovskiy IV, Zubair A, Marjoram P, Lawrie DS,\u00a0<strong>Nuzhdin SV<\/strong>, Samsonova MG. Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network.<em>\u00a0PLoS One.<\/em>\u00a02017.<\/li>\n<li>Ghiselli F, Milani L, Iannello M, Procopio E, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Passamonti M. The complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus (Bivalvia, Veneridae).\u00a0<em>PeerJ<\/em>. 2017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ghiselli_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170478\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Foley BR, Marjoram P,\u00a0<strong>Nuzhdin SV<\/strong>. Basic reversal-learning capacity in flies suggests rudiments of complex cognition.\u00a0<em>PLoS One<\/em>. 2017.<\/li>\n<li>Colombo AR, Zubair A, Thiagarajan D,\u00a0<strong>Nuzhdin S<\/strong>, Triche TJ, Ramsingh G. Suppression of Transposable Elements in Leukemic Stem Cells.\u00a0<em>Scientific Reports<\/em>. 2017.<\/li>\n<li>Plekhanova E, Vishnyakova MA, Bulyntsev S, Chang PL, Carrasquilla-Garcia N, Negash K, Wettberg EV, Noujdina N, Cook DR, Samsonova MG,\u00a0<strong>Nuzhdin SV<\/strong>. Genomic and phenotypic analysis of Vavilov&#8217;s historic landraces reveals the impact of environment and genomic islands of agronomic traits.\u00a0<em>Scientific Reports<\/em>. 2017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Plekhanova_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/388691\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Saltz JB, Lymer S, Gabrielian J,<strong>\u00a0Nuzhdin SV<\/strong>. Genetic Correlations among Developmental and Contextual Behavioral Plasticity in Drosophila melanogaster.\u00a0<em>American Naturalist<\/em>. 2017.<\/li>\n<li>Konorov EA, Nikitin MA, Mikhailov KV, Lysenkov SN, Belenky M, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Scobeyeva VA. (2017) Genomic exaptation enables Lasius niger adaptation to urban environments.\u00a0<em>BMC Evolutionary Biology<\/em>. 2017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Konorov_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/171386\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Chertkova AA, Schiffman JS,\u00a0<strong>Nuzhdin SV<\/strong>, Kozlov KN, Samsonova MG, Gursky VV. In silico evolution of the Drosophila gap gene regulatory sequence under elevated mutational pressure.\u00a0<em>BMC Evolutionary Biology<\/em>. 2017.<\/li>\n<li>Porter SS, Chang PL, Conow CA, Dunham JP, Friesen ML. Association mapping reveals novel serpentine adaptation gene clusters in a population of symbiotic Mesorhizobium.\u00a0<em>ISME J<\/em>. 2017.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Porter_2017.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/171524\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2016\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Hall M, Foley B, Cheung E, Abbasi M,\u00a0<strong>Churches ND<\/strong>.\u00a0A new behavioral phenotyping strategy for Pacific oyster (<i>Crassostrea gigas<\/i>) larvae reveals cohort-level effects on copper toxicity swimming response<span class=\"m_-1068402259724392395gmail-Apple-converted-space\">.\u00a0<\/span><i>Annals of Aquaculture and Research<\/i>. 2016.<\/li>\n<li>Fear JM, Le\u00f3n-Novelo LG, Morse AM, Gerken AR, Van Lehmann K, Tower J,\u00a0<strong>Nuzhdin SV<\/strong>, McIntyre LM. Buffering of Genetic Regulatory Networks in Drosophila melanogaster.\u00a0<i>Genetics<\/i>. 2016.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/281652\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Moriuchi KS, Friesen ML, Cordeiro MA, Badri M, Vu WT, Main BJ, Aouani ME,\u00a0<strong>Nuzhdin SV<\/strong>, Strauss SY, von Wettberg EJ. Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula.\u00a0<i>PLoS One<\/i>. 2016.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/275656\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2015\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Vu WT, Chang PL, Moriuchi KS, Friesen ML: Genetic variation of transgenerational plasticity on seed transcriptome and offspring early response to salinity.\u00a0<i>BMC Plant<\/i>, 2015 15(59):1186. [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Vu_2015.pdf\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA275656\">NCBI BioProject<\/a>]<\/li>\n<li>Kurmangaliyev YZ,<strong>\u00a0Ali S, Nuzhdin SV<\/strong>. Genetic Determinants of RNA editing levels of ADAR Targets in Drosophila melanogaster.\u00a0<i>G3<\/i>. 2015.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/281652\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Kao JY, Lymer S, Hwang SH, Sung A,<strong>\u00a0Nuzhdin SV<\/strong>. Postmating reproductive barriers contribute to the incipient sexual isolation of the United States and Caribbean Drosophila melanogaster.\u00a0<i>Ecology and Evolution<\/i>. 2015.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Kao_2015b.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/274815\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Fear JM, Arbeitman MN, Salomon MP, Dalton JE, Tower J,\u00a0<strong>Nuzhdin SV<\/strong>, McIntyre LM. The Wright stuff: reimagining path analysis reveals novel components of the sex determination hierarchy in Drosophila melanogaster.\u00a0<i>BMC Systems Biology.<\/i>\u00a02015.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/74721\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Asgharian H, Chang PL, Lysenkov S, Scobeyeva VA, Reisen WK,\u00a0<strong>Nuzhdin SV<\/strong>. Evolutionary genomics of Culex pipiens: global and local adaptations associated with climate, life-history traits and anthropogenic factors.\u00a0<i>Proceedings Biological Sciences<\/i>. 2015.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Asgharian_2015.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/284197\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Foley BR, Saltz JB,<strong>\u00a0Nuzhdin SV<\/strong>, Marjoram P. Bayesian approach to social structure uncovers cryptic tegulation of group dynamics in Drosophila melanogaster.\u00a0<i>American Naturalist<\/i>. 2015.<\/li>\n<li>Kurmangaliyev YZ, Favorov AV, Osman NM, Lehmann KV, Campo D, Salomon MP, Tower J, Gelfand MS,\u00a0<strong>Nuzhdin SV<\/strong>. Natural variation of gene models in Drosophila melanogaster.\u00a0<i>BMC Genomics<\/i>. 2015.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Kurmangaliyev_2015.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/281652\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Kao JY, Zubair A, Salomon MP,<strong>\u00a0Nuzhdin SV<\/strong>, Campo D. Population genomic analysis uncovers African and European admixture in Drosophila melanogaster populations from the south-eastern United States and Caribbean Islands.\u00a0<i>Molecular Ecology<\/i>. 2015.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Kao_2015a.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/274815\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2014\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Friesen ML, von Wettberg EJ, Badri M, Moriuchi KS, Barhoumi F, Chang PL, Cuellar-Ortiz S, Cordeiro MA, Vu WT, Arraouadi S, Dj\u00e9bali N, Zribi K, Badri Y, Porter SS, Aouani ME, Cook DR, Strauss SY,\u00a0<strong>Nuzhdin SV<\/strong>. The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula.\u00a0<i>BMC Genomics<\/i>. 2014.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Friesen_2014.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170333\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Asgharian H, Chang PL, Mazzoglio PJ, Negri I: Wolbachia is not all about sex: Male-feminizing Wolbachia alters the leafhopper Zyginidia pullula transcriptome in a mainly sex-independent manner. Frontiers in Microbiology, 2014, 5(430). [<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Asgharian_2014.pdf\">PDF<\/a>] [<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA171390\">NCBI BioProject<\/a>]<\/li>\n<li>Marjoram P, Zubair A,\u00a0<strong>Nuzhdin SV<\/strong>. Post-GWAS: where next? More samples, more SNPs or more biology? Heredity. 2014.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Marjoram_2014.pdf\">[PDF]<\/a><\/li>\n<li>Saltz JB,<strong>\u00a0Nuzhdin SV<\/strong>. Genetic variation in niche construction and its implications: response to Shuker.\u00a0<i>Trends Ecology and Evolution<\/i>. 2014.<\/li>\n<li>Graze RM, McIntyre LM, Morse AM, Boyd BM,\u00a0<strong>Nuzhdin SV<\/strong>, Wayne ML. What the X has to do with it: differences in regulatory variability between the sexes in Drosophila simulans.\u00a0<i>Genome Biology and Evolution<\/i>. 2014.<\/li>\n<li>Cordeiro MA, Moriuchi KS, Fotinos TD, Miller KE,\u00a0<strong>Nuzhdin SV<\/strong>, von Wettberg EJ, Cook DR. Population differentiation for germination and early seedling root growth traits under saline conditions in the annual legume Medicago truncatula (Fabaceae).\u00a0<i>Am J Botany<\/i>. 2014.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170333\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Jalvingh KM, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Wertheim B. Genomic changes under rapid evolution: selection for parasitoid resistance.\u00a0<i>Proceedings Biological Sciences<\/i>. 2014.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Jalvingh_2014.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170455\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2013\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Campo D, Lehmann K, Fjeldsted C, Souaiaia, Kao J, Nuzhdin SV. Whole-genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection. Molecular Ecology. 2013.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Campo_2013.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/74721\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><strong><br \/>\n<\/strong><\/li>\n<li><strong>Nuzhdin SV<\/strong>, Turner TL. Promises and limitations of hitchhiking mapping.\u00a0<em>Curr Opin Genet Dev<\/em>. 2013.<\/li>\n<li>Saltz JB,\u00a0<strong>Nuzhdin SV<\/strong>. Genetic variation in niche construction: implications for development and evolutionary genetics.\u00a0<em>Trends Ecol Evol<\/em>. 2014.<\/li>\n<li>Ghiselli F, Milani L, Guerra D, Chang PL, Breton S,\u00a0<strong>Nuzhdin SV<\/strong>, Passamonti M. Structure, transcription, and variability of metazoan mitochondrial genome: perspectives from an unusual mitochondrial inheritance system.\u00a0<em>Genome Biol Evol<\/em>. 2013.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ghiselli_2013.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/68513\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Main BJ, Smith AD, Jang H,\u00a0<strong>Nuzhdin SV<\/strong>. Transcription start site evolution in Drosophila.\u00a0<em>Mol Biol Evol<\/em>. 2013.<\/li>\n<li>Ardekani R, Biyani A, Dalton JE, Saltz JB, Arbeitman MN, Tower J,\u00a0<strong>Nuzhdin S<\/strong>, Tavar\u00e9 S. Three-dimensional tracking and behaviour monitoring of multiple fruit flies.\u00a0<em>J R Soc Interface<\/em>. 2013.<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2012\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Winbush A, Reed D, Chang PL,\u00a0<strong>Nuzhdin SV<\/strong>, Lyons LC, Arbeitman MN. Identification of gene expression changes associated with long-term memory of courtship rejection in Drosophila males.\u00a0<i>G3<\/i>. 2012.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/WInbush_2012.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170453\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Remolina SC, Chang PL, Leips J,\u00a0<strong>Nuzhdin SV<\/strong>, Hughes KA. Genomic basis of aging and life-history evolution in Drosophila melanogaster.\u00a0<i>Evolution<\/i>. 2012.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Remolina_2012.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/185744\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Sze S-H, Dunham JP, Carey B, Chang PL, Li F, Edman RM, Fjeldsted C, Scott MJ,\u00a0<strong>Nuzhdin SV<\/strong>, Tarone AM: A de novo transcriptome assembly of Lucilia sericata (Diptera: Calliphoridae) with predicted alternative splices, single nucleotide polymorphisms and transcript expression estimates. Insect Molecular Biology, 2012, 21(2):205-21.<\/li>\n<li><strong>Nuzhdin SV<\/strong>, Friesen ML, McIntyre LM. Genotype-phenotype mapping in a post-GWAS world.\u00a0<i>Trends Genet<\/i>. 2012.<\/li>\n<li>Thomas A, Lee PJ, Dalton JE, Nomie KJ, Stoica L, Costa-Mattioli M, Chang PL,\u00a0<strong>Nuzhdin S<\/strong>, Arbeitman MN, Dierick HA. A versatile method for cell-specific profiling of translated mRNAs in Drosophila.\u00a0<i>PLoS One<\/i>. 2012.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Thomas_2012.PDF\">[PDF]<\/a><\/li>\n<li>Saltz JB, Alicuben ET, Grubman J, Harkenrider M, Megowan N,\u00a0<strong>Nuzhdin SV<\/strong>. Nonadditive indirect effects of group genetic diversity on larval viability in Drosophila melanogaster imply key role of maternal decision-making.\u00a0<i>Mol Ecol<\/i>. 2012.<\/li>\n<li>Ghiselli F, Milani L, Chang PL, Hedgecock D, Davis JP,\u00a0<strong>Nuzhdin SV<\/strong>, Passamonti M. De Novo assembly of the Manila clam Ruditapes philippinarum transcriptome provides new insights into expression bias, mitochondrial doubly uniparental inheritance and sex determination.\u00a0<i>Mol Biol Evol<\/i>. 2012.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Ghiselli_2012.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/68513\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2011\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Chang PL, Dunham JP,\u00a0<strong>Nuzhdin SV<\/strong>, Arbeitman MN. Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing.\u00a0<i>BMC Genomics<\/i>. 2011.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Chang_2011.pdf\">[PDF]<\/a>\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/79835\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Bickel RD, Kopp A,\u00a0<strong>Nuzhdin SV<\/strong>. Composite effects of polymorphisms near multiple regulatory elements create a major-effect QTL.\u00a0<i>PLoS Genet<\/i>. 2011<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2010\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Chang PL, Dilkes BP, McMahon M, Comai L,\u00a0<strong>Nuzhdin SV<\/strong>. Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners.\u00a0<i>Genome Biol<\/i>. 2010.\u00a0<a href=\"https:\/\/dornsife.usc.edu\/nlab\/wp-content\/uploads\/sites\/195\/2023\/10\/Chang_2010.pdf\">[PDF]<\/a><\/li>\n<li>Yukilevich R, Turner TL, Aoki F,\u00a0<strong>Nuzhdin SV<\/strong>, True JR. Patterns and processes of genome-wide divergence between North American and African Drosophila melanogaster.\u00a0<i>Genetics<\/i>. 2010.<\/li>\n<li>Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR,\u00a0<strong>Nuzhdin SV<\/strong>. Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.\u00a0<i>Plant J<\/i>. 2010.\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/170333\" target=\"_blank\" rel=\"noopener\">[NCBI BioProject]<\/a><\/li>\n<li>Turner TL, Bourne EC, Von Wettberg EJ, Hu TT,\u00a0<strong>Nuzhdin SV<\/strong>. Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils.\u00a0<i>Nature Genetics<\/i>. 2010.<\/li>\n<li>Foley BR, Genissel A, Kristy HL,\u00a0<strong>Nuzhdin SV<\/strong>. Does segregating variation in sexual or microhabitat preferences lead to non-random mating within a population of Drosophila melanogaster? Biol Lett. 2010.<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2009\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Main BJ, Bickel RD, McIntyre LM, Graze RM, Calabrese PP,\u00a0<strong>Nuzhdin SV<\/strong>. Allele-specific expression assays using Solexa.\u00a0<i>BMC Genomics<\/i>. 2009.<\/li>\n<li>Graze RM, McIntyre LM, Main BJ, Wayne ML,\u00a0<strong>Nuzhdin SV<\/strong>. Regulatory divergence in Drosophila melanogaster and D. simulans, a genomewide analysis of allele-specific expression.\u00a0<i>Genetics<\/i>. 2009.<\/li>\n<li>Bickel RD, Schackwitz WS, Pennacchio LA,\u00a0<strong>Nuzhdin SV<\/strong>, Kopp A. Contrasting patterns of sequence evolution at the functionally redundant bric \u00e0 brac paralogs in Drosophila melanogaster.\u00a0<i>J Mol Evol<\/i>. 2009.<\/li>\n<li>Brisson JA,\u00a0<strong>Nuzhdin SV<\/strong>, Stern DL. Similar patterns of linkage disequilibrium and nucleotide diversity in native and introduced populations of the pea aphid, Acyrthosiphon pisum.\u00a0<i>BMC Genet<\/i>. 2009.<\/li>\n<li><strong>Nuzhdin SV<\/strong>, Brisson JA, Pickering A, Wayne ML, Harshman LG, McIntyre LM. Natural genetic variation in transcriptome reflects network structure inferred with major effect mutations: insulin\/TOR and associated phenotypes in Drosophila melanogaster.\u00a0<i>BMC Genomics<\/i>. 2009.<\/li>\n<li>Telonis-Scott M, Kopp A, Wayne ML,\u00a0<strong>Nuzhdin SV<\/strong>, McIntyre LM. Sex-specific splicing in Drosophila: widespread occurrence, tissue specificity and evolutionary conservation.\u00a0<i>Genetics<\/i>. 2009.<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n                <div class=\"card\">\n\n                    <div class=\"title-description\">\n\n                                                      \n<div class=\"f--field f--cta-title\">\n\n    \n  <h3>\n          2008\n      <\/h3>\n\n\n<\/div>\n                        \n                                                        \n<div class=\"f--field f--description\">\n\n    \n  <ul>\n<li>Turner TL, von Wettberg EJ,\u00a0<strong>Nuzhdin SV<\/strong>. Genomic analysis of differentiation between soil types reveals candidate genes for local adaptation in Arabidopsis lyrata.\u00a0<em>PLoS One<\/em>. 2008.<\/li>\n<li>Cabral LG, Foley BR,\u00a0<strong>Nuzhdin SV<\/strong>. Does sex trade with violence among genotypes in Drosophila melanogaster?\u00a0<em>PLoS One<\/em>. 2008.<\/li>\n<li>Mezey JG,\u00a0<strong>Nuzhdin SV<\/strong>, Ye F, Jones CD. Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome.\u00a0<em>BMC Evol Biol<\/em>. 2008.<\/li>\n<li>Brisson JA,\u00a0<strong>Nuzhdin SV<\/strong>. Rarity of males in pea aphids results in mutational decay.\u00a0<em>Science<\/em>. 2008.<\/li>\n<\/ul>\n\n\n\n<\/div>\n                        \n                    <\/div>\n\n\n                    \n                <\/div>\n\n            \n        <\/div>\n    \n\n  <\/div><\/div>\n\n\n<h6 style=\"text-align: right; font-family: 'Source Sans Pro'; margin-bottom: 2px;\"><strong><em>Website by Marcus Lin<\/em><\/strong><\/h6>\n\n    \n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--contact-details \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--contact-details\"\n    \n      >\n\n    \n  <div class=\"inner-wrapper\">\n\n          <div class=\"header-container\">\n\n                      \n<div class=\"f--field f--section-title\">\n\n    \n  <h2>\n          Contact Us\n      <\/h2>\n\n\n<\/div>\n        \n        \n      <\/div>\n    \n    \n      <div class=\"contacts-container\">\n\n        \n                      <div class=\"contact-card\">\n\n                              <h3>Sergey Nuzhdin<\/h3>\n              \n                                  \n<div class=\"f--field f--description\">\n\n    \n  <p>Ray R. Irani Hall Room 304C<\/p>\n<p><span style=\"font-weight: 400;\">1050 Childs Way<\/span><\/p>\n<p><span style=\"font-weight: 400;\"> Los Angeles CA 90089<\/span><\/p>\n\n\n\n<\/div>\n              \n              \n                              <div class=\"f--email\">\n                  <a href=\"mailto:snuzhdin@usc.edu\">snuzhdin@usc.edu<\/a>\n                <\/div>\n              \n            <\/div>\n                    \n                      <div class=\"contact-card\">\n\n                              <h3>USC Laboratory (MBIO)<\/h3>\n              \n                                  \n<div class=\"f--field f--description\">\n\n    \n  <p>Ray R. 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