{"id":3031,"date":"2025-06-18T04:00:47","date_gmt":"2025-06-18T11:00:47","guid":{"rendered":"https:\/\/dornsife.usc.edu\/magazine\/?p=3031"},"modified":"2026-03-31T14:51:31","modified_gmt":"2026-03-31T21:51:31","slug":"buried-alive","status":"publish","type":"post","link":"https:\/\/dornsife.usc.edu\/magazine\/buried-alive\/","title":{"rendered":"Buried Alive: The Secret Life of Deep Earth Microbes"},"content":{"rendered":"\n\n\n\n\n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--article-hero \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--article-hero\"\n    \n      >\n\n    \n<div class=\"inner-wrapper\">\n          \n<div class=\"f--field f--image\">\n\n    \n    \n    \n    \n    \n    \n              \n      <img\n                            data-src=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_top_fullwidth-768x432.jpg\"\n          data-srcset=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_top_fullwidth-1920x1080.jpg 1920w,https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_top_fullwidth-1280x720.jpg 1280w,https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_top_fullwidth-768x432.jpg 768w\"          data-sizes=\"(min-width:1200px) 75vw, (min-width:768px) 83vw, 100vw\"          class=\"lazyload\"\n        \n                  alt=\"Aerial view of a steaming volcanic crater with a green lake, surrounded by rugged terrain and forested hills under a clear sky.\"\n        \n        \n                                      \/>\n\n    \n    \n  \n  \n\n<\/div>\n  \n      <div class=\"image-caption\">\n          \n<div class=\"f--field f--description\">\n\n    \n  (Photo: iStock.)\n\n\n<\/div>\n    <\/div>\n  \n  <div class=\"text-wrapper\">\n    \n              \n<div class=\"f--field f--page-title\">\n\n    \n  <h1>Buried Alive: The Secret Life of Deep Earth Microbes<\/h1>\n\n\n<\/div>\n    \n          <div class=\"subtitle\">\n            \n<div class=\"f--field f--description\">\n\n    \n  Discover a vast, previously unknown world of microbial life that survives \u2014 and even thrives \u2014 for hundreds of millions of years in some of the planet\u2019s harshest environments.\n\n\n<\/div>\n      <\/div>\n    \n           <strong class=\"author-field\"><span >By<\/span><a href=\"mailto:communication@dornsife.usc.edu\">Susan Bell<\/a><\/strong>\n    \n          <span class=\"post-date-field\">June 18, 2025<\/span>\n      <\/div>\n<\/div>\n\n\n  <\/div><\/div>\n\n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--social-share \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--social-share\"\n    \n      >\n\n    \n  <div class=\"content-wrapper\">\n    <span class=\"a2a_kit a2a_kit_size_32 addtoany_list\" style=\"line-height: 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fill-rule=\"evenodd\" transform=\"translate(-6 -9)\"\/><\/svg>\n            <\/span>\n            <span class=\"a2a_label visually-hidden\">Email<\/span>\n          <\/a>\n                  <\/span>\n  <\/div>\n\n  <\/div><\/div>\n \n\n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--article-intro \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--article-intro\"\n    \n      >\n\n    \n          \n<div class=\"f--field f--description\">\n\n    \n  <p>After a grueling descent into the crater of Costa Rica\u2019s Po\u00e1s Volcano, pioneering geobiologist <a href=\"https:\/\/dornsife.usc.edu\/profile\/karen-lloyd\/\">Karen Lloyd<\/a> paused to catch her breath as she took in the dramatic beauty of the landscape, then turned to the local researcher next to her.<\/p>\n<p>\u201cSo,\u201d she asked, glancing warily at the sputtering crater of acid at her feet, \u201cwhat\u2019s our exit strategy again if this thing goes off?\u201d<\/p>\n<p>\u201cThat\u2019s easy,\u201d he laughed. \u201cJust turn around and admire the view. Because it\u2019s going to be the last one you\u2019ll ever see.\u201d<\/p>\n\n\n\n<\/div>\n  \n\n  <\/div><\/div>\n\n\n\n\n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--rich-text \"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--rich-text\"\n    \n      >\n\n    \n      \n<div class=\"f--field f--wysiwyg\">\n\n    \n  <p>Fortunately for Lloyd and her colleagues, their research expedition to collect samples of subsurface life from the subduction zone around the volcano passed without incident.<\/p>\n<p>But just 54 days later, the sputtering burst into a furious torrent of ejected boulders and the spectacular view disappeared, engulfed in a dark, mushrooming cloud of volcanic ash as Po\u00e1s erupted in what was Costa Rica\u2019s most serious volcanic episode in more than 60 years.<\/p>\n<p>For Lloyd, known for her groundbreaking work in microbial geochemistry, that moment eight years ago was more than a brush with danger \u2014 it was a reminder of the high-stakes environments her field depends upon to gain understanding of the deep workings of our planet.<\/p>\n<p>Over the past two decades, that understanding has undergone a radical shift. Lloyd, Wrigley Chair in <a href=\"https:\/\/dornsife.usc.edu\/environmental-studies\/\">Environmental Studies<\/a> and professor of <a href=\"https:\/\/dornsife.usc.edu\/earth\/\">Earth sciences<\/a>, is part of a global group of scientists behind a major discovery that is transforming how we think about life on Earth. The scientists revealed the existence of a vast, previously hidden world of living biomass inside the planet\u2019s crust. This biosphere consists of active microorganisms, hundreds of millions of years old, that are thriving in extreme environments once thought uninhabitable.<\/p>\n<p>As Lloyd details in her new book, <em>Intraterrestrials: Discovering the Strangest Life on Earth<\/em>, these subsurface microbes can survive in boiling water, acid \u2014 even bleach. Some can \u201cbreathe\u201d rocks, metals or electrons. Some are hundreds of thousands of years old. All live in ways completely alien to us surface dwellers.<\/p>\n<p>\u201cOvercoming the challenges of sample contamination to find conclusive proof took years of painstaking work, but the evidence is now overwhelming,\u201d Lloyd says. \u201cThese deep-life microbes are real. They\u2019re alive and they have decidedly weird lifestyles \u2014 doing strange, fascinating things we\u2019re only just beginning to understand.\u201d<\/p>\n<p>To hunt them down, Lloyd and her colleagues explore permafrost in the Arctic, hot springs in Iceland, rift basins in the American Southwest, and volcanoes in Costa Rica, New Zealand and the Andes. In these places, tectonic activity squeezes ancient groundwater to the surface \u2014 much as we might wring out a washcloth \u2014 creating natural laboratories for studying Earth\u2019s hidden biosphere.<\/p>\n<p>Each location offers a different window into Earth\u2019s deep history, where materials are exchanged between the surface and the subsurface world. In New Mexico\u2019s rift basins, the ground stretches apart, pulling up ancient fluids. In Idaho, springs near old Yellowstone hotspots mark how the continent has drifted. Iceland, in contrast, sits atop both a spreading center<em> and<\/em> volcanic hotspot, producing a radically different subsurface chemistry.<\/p>\n<div class=\"video-embed\"><iframe loading=\"lazy\" title=\"1.2 Kilometers Deep: The Search for Life Inside Earth&#039;s Crust\" width=\"500\" height=\"281\" src=\"https:\/\/www.youtube.com\/embed\/QYZyRGxOP2c?feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen><\/iframe><\/div>\n<h2>Subsurface Survivors<\/h2>\n<p>Lloyd \u2014 a marine biologist by training whose work builds on the trailblazing research of USC Dornsife professors <a href=\"https:\/\/dornsife.usc.edu\/profile\/kenneth-nealson\/\">Kenneth Nealson<\/a> and the late <a href=\"https:\/\/dornsife.usc.edu\/news\/stories\/in-memoriam-katrina-j-edwards-46\/\">Katrina Edwards<\/a> and <a href=\"https:\/\/dornsife.usc.edu\/news\/stories\/jan-amend-obituary\/\">Jan Amend<\/a> \u2014 also explores microbial life thriving beneath the ocean floor. This research into deep sea sediments enables Lloyd to dive not just into the ocean, but into time itself, peering back to the dawn of life on Earth.<\/p>\n<p>Her team uses drills, push cores and even submersibles to retrieve mud from the ocean bottom, extracting it in cores and slicing it into layers to analyze the microbial life within.<\/p>\n<p>Deep-ocean mud might not sound too thrilling an environment, but to Lloyd it\u2019s a portal into a mysterious and exciting secret world.<\/p>\n<p>Imagine, she says, being a microbe. You fall to the seafloor in a slow rain of organic detritus \u2014 dead plankton, river runoff, sunken particles. Then you\u2019re buried, grain by grain. You end up meters below the sea, where nothing much happens. For hundreds of thousands \u2014 sometimes hundreds of millions \u2014 of years.<\/p>\n<p>\u201cAnd you keep living for all that time,\u201d she says. \u201cThese are not lively lives. There\u2019s not enough energy down there to reproduce. But they persist \u2014 barely \u2014 metabolizing just enough to survive.\u201d<\/p>\n<p>The implication is staggering \u2014 and not just because some of these single-celled organisms may have been alive for a hundred million years. Despite their similar appearances under a microscope, the genetic differences of these organisms are far more profound than any between humans and other visible forms of life on Earth.<\/p>\n<blockquote><p>They\u2019ve been down there changing slowly, unnoticed for nearly as long as Earth has had life.\u201d<\/p><\/blockquote>\n<h2>The Life Beneath<\/h2>\n<figure id=\"attachment_3032\" aria-describedby=\"caption-attachment-3032\" style=\"width: 300px\" class=\"wp-caption alignright\"><img loading=\"lazy\" decoding=\"async\" class=\"size-medium wp-image-3032\" src=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_instory_b-300x225.jpg\" alt=\"Woman in safety vest and USC Dornsife cap smiles at a steamy geothermal site, with scientific tools visible in the foreground.\" width=\"300\" height=\"225\" srcset=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_instory_b-300x225.jpg 300w, https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_instory_b-768x576.jpg 768w, https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/04_buriedalive_instory_b.jpg 980w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/><figcaption id=\"caption-attachment-3032\" class=\"wp-caption-text\">Photo: Courtesy of Karen Lloyd<\/figcaption><\/figure>\n<p>On the surface, life displays dazzling diversity \u2014 from towering sequoias to luminous jellyfish, from scuttling ants to graceful giraffes. But even the most alien-looking organisms we can see are remarkably close cousins, evolutionarily speaking. \u201cI look at my children and then at a jellyfish \u2014 clearly different species,\u201d Lloyd says. \u201cBut when we look at their DNA, we find that we only diverged from jellyfish a few hundred million years ago.\u201d<\/p>\n<p>That may sound like a long time ago \u2014 but in evolutionary terms, it\u2019s a mere blink of an eye, particularly when compared to the timescale of subsurface microbes. They diverged from one another billions of years ago.<\/p>\n<p>\u201cThere are 100 billion billion billion living microbial cells underlying all the world\u2019s oceans,\u201d Lloyd says. \u201cThat\u2019s 200 times more than the total biomass of humans on this planet. And those microbes have a fundamentally different relationship with time and energy than we do.\u201d<\/p>\n<p>Another striking way that subsurface life forms differ from those on the surface of the planet \u2014 and from each other \u2014 lies in what they breathe.<\/p>\n<p>\u201cMost visible life on Earth either respires oxygen, ferments, or photosynthesizes \u2014 and that\u2019s it,\u201d says Lloyd. \u201cBut some species of subsurface life can \u2018breathe\u2019 every metal on the periodic table, including arsenic, while others breathe carbon dioxide. That\u2019s not something any visible life form can do.\u201d<\/p>\n<p>To \u201cbreathe,\u201d in this context, means to harvest energy through redox reactions \u2014 chemical exchanges through which electrons are transferred. When those reactions are coupled to energy production inside the cell, it\u2019s called respiration. For microbes buried deep underground, oxygen often isn\u2019t even part of the equation.<\/p>\n<p>Even more fascinating, metal-breathing microbes are not confined to one lineage. Just as diverse organisms on the surface have evolved to breathe oxygen, metal breathers appear on wildly different branches of the tree of life \u2014 a testament to life\u2019s adaptability and the evolutionary forces shaping it far beneath our feet.<\/p>\n<p>\u201cIt makes perfect sense when you think about it,\u201d Lloyd says. \u201cThey\u2019ve had 10 times more time to evolve in different directions. They\u2019ve been down there, changing slowly, unnoticed, for nearly as long as Earth has had life.<\/p>\n<p>\u201cNow, the cutting-edge methods we are developing to study the subsurface have enabled us to discover that there are branches on the tree of life that we never knew existed until now \u2014 lineages of life that had gone undetected for billions of years,\u201d she says.<\/p>\n<p>This realization reshapes our understanding of biology. It suggests that we\u2019ve only scratched the surface \u2014 literally \u2014 of life on Earth.<\/p>\n<h2>Practical Potential<\/h2>\n<p>This extraordinary endurance isn\u2019t just biologically fascinating, it may have real-world applications. One of Lloyd\u2019s collaborators at USC Dornsife, <a href=\"https:\/\/dornsife.usc.edu\/profile\/drew-steen\/\">Andrew Steen<\/a>, associate professor of <a href=\"https:\/\/dornsife.usc.edu\/bisc\/\">biological sciences<\/a> and Earth sciences, is investigating whether protein-stabilizing microbes could help extend the shelf life of vaccines without refrigeration \u2014 a breakthrough that could revolutionize access to healthcare in parts of the world with limited resources.<\/p>\n<p>Lloyd\u2019s trip to Costa Rica \u2014 which sits on a subduction zone \u2014 also helped solve a puzzle with implications for the climate: Why does carbon dioxide escape in massive plumes from the country\u2019s volcanoes, but only in tiny puffs from its hot springs?<\/p>\n<p>Her team discovered that deep underground, microbes and rock reactions were converting the gas into carbonate minerals, locking it into rock before it reached the surface. That insight could inform carbon capture strategies. Instead of releasing CO\u2082 into the atmosphere, we could pipe it underground, where microbes would help turn it to stone. In some cases, with hydrogen present, microbes can even convert CO\u2082 into methane \u2014 creating a usable energy source, although with climate trade-offs.<\/p>\n<p>From vaccine preservation and carbon capture to enzyme stabilization and insights into aging, Lloyd\u2019s research has far-reaching potential. But she\u2019s quick to point out that real-world benefits aren\u2019t her primary focus.<\/p>\n<p>\u201cI\u2019m not looking for any particular solution or benefit,\u201d she says. \u201cMy goal is to push the boundaries of what we know to best provide for other people who <em>are<\/em> doing practical stuff. That\u2019s the promise of blue-sky research.\u201d<\/p>\n<p>Still, her excitement about the possibilities is palpable. \u201cIf we can make such a big breakthrough from just one study, then imagine what else is waiting to be discovered down there?\u201d Lloyd says. \u201cThis new field of geobiochemistry is going to have huge implications \u2014 maybe even predicting earthquakes or finding life beyond our planet.\u201d<\/p>\n<p>It could even, she says, help us understand the origin of life itself.<\/p>\n<p>\u201cLife buried deep within the Earth\u2019s crust may seem irrelevant to our daily lives,\u201d she says. \u201cBut this weird, slow life may hold the answers to some of our planet\u2019s greatest mysteries \u2014 and challenges.\u201d<\/p>\n<div class=\"video-embed\"><iframe loading=\"lazy\" title=\"Scientists Discover Thriving Life in Earth&#039;s Darkest Places\" width=\"500\" height=\"281\" src=\"https:\/\/www.youtube.com\/embed\/CBi9k4tkqxs?feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" referrerpolicy=\"strict-origin-when-cross-origin\" allowfullscreen><\/iframe><\/div>\n\n\n\n<\/div>\n\n\n  <\/div><\/div>\n\n\n\n  \n    \n\n\n\n\n\n\n<div\n  class=\"cc--component-container cc--signup-form dark\"\n\n  \n  \n  \n  \n  \n  \n  >\n  <div class=\"c--component c--signup-form\"\n    \n      >\n\n    \n<div class=\"text-image-container\">\n  <div class=\"text-container\">\n\n              \n<div class=\"f--field f--section-title\">\n\n    \n  <h2>\n          USC Dornsife Magazine\n      <\/h2>\n\n\n<\/div>\n    \n              \n<div class=\"f--field f--description\">\n\n    \n  <h2 style=\"color: white;\">Spring \/ Summer 2025<\/h2>\n<h1 style=\"color: white;\">The Life Issue<\/h1>\n\n\n\n<\/div>\n    \n              \n<div class=\"f--field f--link\">\n\n    \n    \n  \n<a \n  class=\"link\"\n  href= https:\/\/dornsife.usc.edu\/magazine\/the-life-issue\/\n    aria-label=\"Read more about Back to Issue\"  \n>\n    Back to Issue \n  <svg version=\"1.1\" xmlns=\"http:\/\/www.w3.org\/2000\/svg\" xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\" x=\"0px\" y=\"0px\" viewBox=\"0 0 35 35\" enable-background=\"new 0 0 35 35\" width=\"25\" height=\"25\" xml:space=\"preserve\"><polygon fill-rule=\"evenodd\" clip-rule=\"evenodd\" fill=\"#000\" points=\"19.3,27.5 29.3,17.5,19.3,7.5 16.3,10.4 21.4,15.4 6.7,15.4 6.7,19.6 21.4,19.6 16.3,24.6 \"\/><\/svg>\n<\/a>\n\n\n<\/div>\n\n      <\/div>\n\n      <div class=\"image-container\">\n          \n<div class=\"f--field f--image\">\n\n    \n    \n    \n    \n    \n    \n              \n      <img\n                            data-src=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/LandingPage_Hero-900x600.jpg\"\n          data-srcset=\"https:\/\/dornsife.usc.edu\/magazine\/wp-content\/uploads\/sites\/2\/2025\/06\/LandingPage_Hero-1200x800.jpg 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