{"id":348,"date":"2023-09-29T08:33:10","date_gmt":"2023-09-29T15:33:10","guid":{"rendered":"https:\/\/dornsife.usc.edu\/fuhrmanlab\/?page_id=348"},"modified":"2023-11-03T16:57:31","modified_gmt":"2023-11-03T23:57:31","slug":"links","status":"publish","type":"page","link":"https:\/\/dornsife.usc.edu\/fuhrmanlab\/links\/","title":{"rendered":"Links"},"content":{"rendered":"\n\n \n \n\n\n\n\n\n\n\n
\n\n \n \n
\n\n \n
\n
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Currently Funded projects<\/h2>\n
\n

Simons Foundation: CBIOMES<\/a><\/p>\n

NSF: MIM: Machine Learning, Systems Modeling, and Experimental Approaches to Understand the Universal Rules of Life of Microbiota Using Marine Time Series Data.<\/a> In collaboration with Fengzhu Sun (USC), Jinchi Lv (USC), Yan Liu (USC), and Emily Zakem (Carnegie Institution).<\/p>\n

Past<\/h2>\n

NSF: \u00a0USC Microbial Observatory\/San Pedro Ocean Time Series<\/a><\/p>\n

NIH: Linking viruses and hosts in metagenomic data bioinformatically<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n

\n
\n

Affiliated Projects<\/h2>\n
\n

Ocean Sampling Day, Micro3<\/a>
\nEarth Microbiome Project<\/a>
\nTara Oceans<\/a><\/p>\n<\/div>\n

 <\/p>\n<\/div>\n

\n

USC Affiliates<\/h2>\n
\n

Department of Biological Sciences, Marine Environmental Biology Program<\/a>
\nEnvironmental Studies Program<\/a>
\nSan Pedro Ocean Time Series (SPOT)<\/a>
\nUSC Microbial Observatory<\/a>
\nUSC Sea Grant<\/a>
\nWrigley Institute for Environment and Sustainability<\/a><\/p>\n

Fengzhu Sun<\/a><\/p>\n

 <\/p>\n<\/div>\n<\/div>\n

\n

Related Outside Laboratories<\/h2>\n
\n

Caron Lab, USC<\/a>
\nGiovannoni Lab, OSU<\/a>
\nJones Lab, KAUST<\/a>
\nMartiny Lab, UCI<\/a>
\nMeren Lab, HIFMB<\/a>
\nNoble Lab, UNC Chapel Hill<\/a>
\nOrange County Sanitation District (OCSan)<\/a>
\nRohwer Lab, SDSU<\/a>
\nSantoro Lab, UCSB<\/a>
\nSouthern California Coastal Water Research Project (SCCWRP)<\/a>
\nSullivan Lab, The OSU<\/a>
\nSuttle Lab, UBC<\/a>
\nWommack Lab, UDEL<\/a><\/p>\n

Follows Lab MIT<\/a><\/p>\n

Armbrust Lab, U Washington<\/a><\/p>\n

 <\/p>\n<\/div>\n<\/div>\n

\n

Microbial Observatories and Time Series Stations<\/h2>\n
\n

Alpine Microbial Observatory, CU-Boulder<\/a>
\nArctic LTER (ARC)<\/a>
\nBermuda Atlantic Time-series Study (BATS)<\/a>
\nBoiling Springs Lake (BSL) Microbial Observatory<\/a>
\nCalifornia Current Ecosystem LTER (CCE)<\/a>
\nCalifornia Cooperative Oceanic Fisheries Investigations (Calcofi)<\/a>
\nCedar Creek Natural History Area Microbial Observatory, UMN<\/a>
\nCoweeta LTER (CWT)<\/a>
\nDuke Forest Mycological Observatory, Duke<\/a>
\nFlorida Coastal Everglades LTER (FCE)<\/a>
\nGeorgia Coastal Ecysystems LTER (GCE)<\/a>
\nHawaiian Ocean Time Sereies (HOT) \/ ALOHA, UH<\/a>
\nHubbard Brook LTER (HBR)<\/a>
\nMcMurdo LTER (MCM)<\/a>
\nMethylotrophic Microbial Observatory, UW<\/a>
\nMoorea Coral Reef LTER (MCR)<\/a>
\nNorth Temperate Lakes Microbial Observatory, UWISC LTER<\/a>
\nPalmer Station LTER (PAL)<\/a>
\nPlum Island Sound Estuary LTER (PIE)<\/a>
\nSalt Plains Microbial Observatory, OK State<\/a>
\nSan Salvador Microbial Observatory<\/a>
\nSanta Barbara Coastal LTER (SBC)<\/a>
\nSapelo Island Microbial Carbon Observatory (SIMCO), UGA
\nSoap Lake Microbial Observatory, CWU<\/a>
\nUSC Microbial Observatory<\/a>
\nVirginia Coastal Reserve LTER (VCR)<\/a><\/p>\n

 <\/p>\n<\/div>\n<\/div>\n

\n

Online Resources and Informatic Tools<\/h2>\n
\n

Anvi’o: ANalysis and VIsualization platform for ‘Omics data<\/a><\/p>\n

ARB Project<\/a>
\nComprehensive R Archive Network (CRAN)<\/a>
\nGenBank<\/a>
\nGenomes OnLine Database (GOLD), JGI<\/a>
\nGreen Genes<\/a>
\nIDT Oligo Analyzer Tool<\/a>
\nIntegrated Microbial Genomes System (IMG)<\/a>
\nInternational Census of Marine Microbes (ICOMM)<\/a>
\niPLANT<\/a>
\nmothur<\/a>
\nNCBI: National Center for Biotechnology Information<\/a>
\nprotocols.io: Life Science Protocol Repository<\/a>
\nQIIME 2<\/a>
\nRibosomal Database Project<\/a>
\nSILVA<\/a>
\nVERVENet<\/a><\/p>\n

Happy Belly Bioinformatics<\/a><\/p>\n

extended Local Similarity Analysis with 3-way Liquid Association<\/a><\/p>\n

Fuhrman Lab tools on protocols.io<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<\/div>\n\n\n <\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":584,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"page-content-detail.php","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-348","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"\nLinks - Fuhrman Lab<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/dornsife.usc.edu\/fuhrmanlab\/links\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Links - Fuhrman Lab\" \/>\n<meta property=\"og:url\" content=\"https:\/\/dornsife.usc.edu\/fuhrmanlab\/links\/\" \/>\n<meta property=\"og:site_name\" content=\"Fuhrman Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2023-11-03T23:57:31+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/dornsife.usc.edu\/fuhrmanlab\/links\/\",\"url\":\"https:\/\/dornsife.usc.edu\/fuhrmanlab\/links\/\",\"name\":\"Links - 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