{"id":193,"date":"2026-02-18T23:46:54","date_gmt":"2026-02-19T07:46:54","guid":{"rendered":"https:\/\/dornsife.usc.edu\/dsig\/?page_id=193"},"modified":"2026-04-12T19:12:27","modified_gmt":"2026-04-13T02:12:27","slug":"publications","status":"publish","type":"page","link":"https:\/\/dornsife.usc.edu\/dsig\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n\n \n \n\n\n\n\n\n\n\n
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Peer-reviewed publications:\u00a0<\/strong><\/h3>\n

1. Bai, Y., Jones, M., Ojeda, L.S., Cuala, J., Cherchia, L., Georgia, S.K., Fraser, S.E., Truong, T.V. A Versatile Light Field Microscopy Platform for Multi-purpose Dynamic Volumetric Bio-imaging. bioRxiv (2024) (in revision). https:\/\/doi.org\/10.1101\/2024.09.30.615205<\/p>\n

2. Luu, P., Nadtochiy, A., Zanon, M., Moreno, N., Messina, A., Petrazzini, M.E.M., Perez, J.V.T., Keomanee-Dizon, K., Jones, M., Brennan, C.H., Vallortigara, G., Fraser, S.E., Truong, T.V. Neural Basis of Number Sense in Larval Zebrafish. bioRxiv (2024) (in revision). https:\/\/doi.org\/10.1101\/2024.08.30.610552<\/p>\n

3. Winter, C.M., Szekely, P., Popov, V., Belcher, H., Carter, R., Jones, M., Fraser, S.E., Truong, T.V., Benfey, P.N. SHR and SCR coordinate root patterning and growth early in the cell cycle. Nature 626, 611\u2013616. https:\/\/doi.org\/10.1038\/s41586-023-06971-z (2024).<\/p>\n

4. Nadtochiy, A., Luu, P., Fraser, S.E., Truong, T.V. VoDEx: a Python library for time annotation and management of volumetric functional imaging data. Bioinformatics btad568. https:\/\/doi.org\/10.1093\/bioinformatics\/btad568 (2023).<\/p>\n

5. Wang, P., Kitano, M., Keomanee-Dizon, K., Truong, T.V., Fraser, S.E., Cutrale, F. A single-shot hyperspectral phasor camera for fast, multi-color fluorescence microscopy. Cell Reports Methods 3, 100441. https:\/\/doi.org\/10.1016\/j.crmeth.2023.100441 (2023).<\/p>\n

6. Djenoune, L., Mahamdeh, M., Truong, T.V., Nguyen, C.T., Fraser, S.E., Brueckner, M., Howard, J., Yuan, S.. Cilia function as calcium-mediated mechanosensors that instruct left-right asymmetry. Science 379, 71\u201378. https:\/\/doi.org\/10.1126\/science.abq7317 (2023).<\/p>\n

7. Messina, A., Potrich, D., Perrino, M., Sheardown, E., Miletto Petrazzini, M.E., Luu, P., Nadtochiy, A., Truong, T.V., Sovrano, V.A., Fraser, S.E., Brennan, C.H., Vallortigara, G. Quantity as a Fish Views It: Behavior and Neurobiology. Frontiers in Neuroanatomy 16 (2022).<\/p>\n

8. Dempsey, W.P., Du, Z., Nadtochiy, A., Smith, C.D., Czajkowski, K., Andreev, A., Robson, D.N., Li, J.M., Applebaum, S., Truong, T.V., Kesselman, C., Fraser, S.E., Arnold, D.B., 2022. Regional synapse gain and loss accompany memory formation in larval zebrafish. PNAS 119 (2022).<\/p>\n

9. Keomanee-Dizon, K., Jones, M., Luu, P., Fraser, S.E., Truong, T.V. Extended depth-of-field light-sheet microscopy improves imaging of large volumes at high numerical aperture. Appl. Phys. Lett. 121, 163701 (2022).<\/p>\n

10. Madaan, S.*, Keomanee-Dizon, K.*, Jones, M., Zhong, C., Nadtochiy, A., Luu, P., Fraser, S.E., Truong, T.V. Single-objective selective-volume illumination microscopy enables high-contrast light-field imaging. Optics Letters 46, 2860\u20132863 (2021).<\/p>\n

11. Keomanee-Dizon, K., Fraser, S.E., Truong, T.V. A versatile twin-microscope system for light-sheet imaging. Review of Scientific Instruments 91, 053703 (2020).<\/p>\n

12. Truong, T.V.* (shared corresponding authorship), Holland, D.B.*, Madaan, S*, Andreev, A., Keomanee-Dizon, K., Troll, J.V., Koo, D.E.S, McFall-Ngai, M., Fraser, S.E. (shared corresponding authorship). Selective volume illumination microscopy offers synchronous volumetric imaging with high contrast. Communications Biology 3, 74 (2020).<\/p>\n

13. Nadeau, J.L., Schadegg, M., Hanczarek, I., Serabyn, E., Liewer, K., Truong, T., Lindensmith, C.A., Fraser, S., 2019. A Portable, Robust Light Field Microscope for Field and Flight Applications, in: The Astrobiology Science Conference (AbSciCon) pp. 211\u20138 (2019).<\/p>\n

14. Lee, D.A., Andreev, A., Truong, T.V., Chen, A., Hill, A.J., Oikonomou, G., Pham, U., Hong, Y.K., Tran, S., Glass, L., Sapin, V., Engle, J., Fraser, S.E., Prober, D.A. Genetic and neuronal regulation of sleep by neuropeptide VF. eLife 6:e25727 (2017).<\/p>\n

15. Bower, D.V., Lansdale, N., Navarro, S., Truong, T.V., Bower, D.J., Featherstone, N.C., Connell, M.G., Alam, D.A., Frey, M.R., Trinh, L.A., Fernandez, G.E., Warburton, D., Fraser, S.E., Bennett, D., Jesudason, E.C. Serca directs cell migration and branching across species and germ layers. Biology Open 6, 1458-1471 (2017).<\/p>\n

16. Dempsey, W.P., Georgieva, L., Helbling, P.M., Sonay, A.Y., Truong, T.V., Haffner, M., Pantazis, P. In vivo single cell labeling by confined primed conversion. Nature Methods, Vol. 12, 645 (2015).<\/p>\n

17. Li, Y., Trivedi, V., Truong, T.V., Koos, D.S., Lansford, R., Chuong, C.M., Warburton, D., Moats, R.A., Fraser, S.E. Dynamic analyses of the growth plate cartilage provide novel insights into skeletal morphogenesis. Nature Communications, Vol. 6, article number 6798 (2015).<\/p>\n

18. Trivedi, V.*, Truong, T.V.*, Holland, D.B., Trinh, L.A., Liebling, M., Fraser, S.E. Dynamic structure and protein expression of the live embryonic heart captured by 2-photon light sheet microscopy retrospective registration. Biomedical Optics Express, Vol. 6(6), 2056-2066 (2015).<\/p>\n

19. Reeves, G.T.*, Trisnadi, N.*, Truong, T.V., Nahmad, M., Katz, S., Stathopoulos, A. Dorsal-ventral gene expression in the Drosophila embryo reflects the dynamics and of the Dorsal nuclear gradient. Developmental Cell, Vol. 22, 544 (2012).<\/p>\n

20. Supatto, W., Truong, T.V., D\u00e9barre, D., Beaurepaire, E. Advances in multiphoton microscopy for imaging embryos. Current Opinion in Genetics & Development, Developmental mechanisms, patterning and evolution 21, 538\u2013548 (2011).<\/p>\n

21. Truong, T.V.* (shared corresponding authorship), Supatto, W.*, Koos, D.S., Choi, J.M., Fraser, S.E. (shared corresponding authorship). Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nature Methods, Vol. 8, 757 (2011).<\/p>\n

22. Truong, T.V., Supatto, W. Toward high-content\/high-throughput imaging and analysis of embryonic morphogenesis. Genesis 49, 555\u2013569 (2011).<\/p>\n

23. Truong, T.V., Shen, Y.R. Resonance-Enhanced Optical Reorientation of Molecules in Liquids via Intermolecular Interaction. Physical Review Letters, Vol. 99, 187802 (2007).<\/p>\n

24. Truong, T.V., Chen, C.-Y., Tabiryan, N.V., Shen, Y.R. Phase Transition Induced by Two- Photon Absorption in Azobenzene Liquid Crystals. Journal of the Optical Society of America B, Vol. 24, 2623 (2007).<\/p>\n

25. Truong, T.V., Xu, L., Shen, Y.R. Dynamics of guest-host orientational interaction in dye-doped liquid crystalline materials. Physical Review E, Vol. 72, 051709 (2005).<\/p>\n

26. Truong, T.V., Shen, Y.R. Novel method for selective probing of ground-state rotational dynamics of solutes in solvents. Journal of Chemical Physics, Vol. 122, 091104 (2005).<\/p>\n

27. Truong, T.V., Xu, L., Shen, Y.R. Early Dynamics of Guest-Host Interaction in Dye-Doped Liquid Crystalline Materials. Physical Review Letters, Vol. 90, 193902 (2003).<\/p>\n

28. Levine, H., Aranson, I., Tsimring, L., Truong, T.V. Positive genetic feedback governs cAMP spiral wave formation in Dictyostelium. PNAS 93, 6382\u20136386 (1996).<\/p>\n

Patents:<\/strong><\/h3>\n

1. Thai V. Truong, Kevin Keomanee-Dizon, Scott E. Fraser, \u201cOptimized photon collection for light-sheet microscopy\u201d. Published patent publication number: US 12,411,088 B2.<\/p>\n

2. Thai V. Truong, Sara Madaan, Daniel B. Holland, Scott E. Fraser, \u201cOptimized volumetric imaging with selective volume illumination and light field detection\u201d. Published patent publication number: US 20,190,064,493 A1.<\/p>\n

3. Thai V. Truong, John M Choi, Scott E. Fraser, Willy Supatto, David S. Koos. \u201cMultiple-photon excitation light sheet illumination microscope\u201d. Published patent publication number: US 8441633 B2.<\/p>\n

4. Thai V. Truong, John M Choi, Scott E. Fraser, Willy Supatto, David S. Koos, \u201cDual-mode raster point scanning\/light sheet illumination microscope\u201d. Published patent publication number: US 8570649 B2.<\/p>\n

5. Periklis Pantazis, William P. Dempsey, Thai V. Truong, Scott E. Fraser, Lada Georgieva, “Method and device to achieve spatially confined photointeraction at the focal volume of a microscope”. Published patent publication number: US 20160054553 A1.<\/p>\n

6. John M. Choi, Thai V. Truong, David S. Koos, \u201cSimultaneous orthogonal light sheet microscopy and computed optical tomography\u201d. Published patent publication number: US8575570 B2.<\/p>\n

7. Sameer S. Walavalkar, Andrew P. Homyk, William M. Jones, Axel Scherer, Scott Fraser, Thai V. Truong, \u201cOptical sensor for analyte detection\u201d. Published patent publication number: US 2014\/0099732 A1.<\/p>\n\n\n\n<\/div>\n\n\n <\/div><\/div>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1124,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-193","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"\nPublications - Dynamic System Imaging Group<\/title>\n<meta name=\"robots\" content=\"noindex, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Dynamic System Imaging Group\" \/>\n<meta property=\"og:url\" content=\"https:\/\/dornsife.usc.edu\/dsig\/publications\/\" \/>\n<meta property=\"og:site_name\" content=\"Dynamic System Imaging Group\" \/>\n<meta property=\"article:modified_time\" content=\"2026-04-13T02:12:27+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/dornsife.usc.edu\/dsig\/publications\/\",\"url\":\"https:\/\/dornsife.usc.edu\/dsig\/publications\/\",\"name\":\"Publications - 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