{"id":226,"date":"2023-11-10T11:25:33","date_gmt":"2023-11-10T19:25:33","guid":{"rendered":"https:\/\/dornsife.usc.edu\/caron\/?page_id=226"},"modified":"2025-09-18T11:53:59","modified_gmt":"2025-09-18T18:53:59","slug":"publications","status":"publish","type":"page","link":"https:\/\/dornsife.usc.edu\/caron\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\n\n \n \n\n\n\n\n\n\n\n
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Below you will find a chronological list of lab publications with the most recent listed first. Please click on the \u201cpdf\u201d link after each individual reference to open the publication in a new tab in your browser window.<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
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2025<\/h4>\n

Trubovitz\u00a0S, Sandin\u00a0MM, Caron\u00a0DA (2025) Genetic variability in microbial eukaryotes reshapes marine biodiversity assessment in the age of amplicon sequencing. PLOS ONE 20(6): e0326053. https:\/\/doi.org\/10.1371\/journal.pone.0326053<\/a>. pdf<\/a><\/p>\n

Kalra I, <\/span><\/span>Stewart BP, <\/span><\/span>Florea KM, <\/span><\/span>Smith J, <\/span><\/span>Webb EA, <\/span>Caron DA.<\/span><\/span> 2025.<\/span> Temporal and spatial dynamics of harmful algal bloom-associated microbial communities in eutrophic Clear Lake, California. Appl Environ Microbiol<\/span> 91:e00011-25.<\/span>https:\/\/doi.org\/10.1128\/aem.00011-25.<\/a>\u00a0pdf<\/a><\/p>\n

Beatty, J.L., Stewart, B.P., Mesrop, L.Y., DeLong, E.F., Karl, D.M. and Caron, D.A. (2025), Eddy dipole differentially influences particle-associated and water column protistan community composition. Limnol Oceanogr, 70: 817-832. https:\/\/doi.org\/10.1002\/lno.12785<\/a>. pdf\u00a0<\/a><\/p>\n

Gleich SJ, <\/span><\/span>Mesrop LY, <\/span><\/span>Cram JA, <\/span><\/span>Weissman JL, <\/span><\/span>Hu SK, <\/span><\/span>Yeh Y, <\/span><\/span>Fuhrman JA, <\/span>Caron DA.<\/span><\/span> 2025.<\/span> With a little help from my friends: importance of protist-protist interactions in structuring marine protistan communities in the San Pedro Channel. mSystems<\/span>10:e01045-24. <\/span>https:\/\/doi.org\/10.1128\/msystems.01045-24.<\/a> pdf<\/a><\/p>\n

Seelen, E.A., Gleich, S.J., Kumler, W. et al. <\/i>2025. Nitrogen and phosphorus differentially control marine biomass production and stoichiometry. Nat Commun<\/i> 16<\/b>, 5713 . https:\/\/doi.org\/10.1038\/s41467-025-61061-0. pdf\u00a0<\/a><\/p>\n

2024<\/b><\/h4>\n

Mak, E.W.K.<\/span>, Turk-Kubo, K.A.<\/span>, Caron, D.A.<\/span>, Harbeitner, R.C.<\/span>, Magasin, J.D.<\/span>, Coale, T.H.<\/span> et al. (2024<\/span>) Phagotrophy in the nitrogen-fixing haptophyte Braarudosphaera bigelowii<\/i><\/span>. Environmental Microbiology Reports<\/i>, 16<\/span>(4<\/span>), e13312. Available from: https:\/\/doi.org\/10.1111\/1758-2229.13312<\/a>. pdf<\/p>\n

Seelen, E.A., Townsend, E., Gleich, S.J., Caron, D.A., Dugenne, M., White, A.E., Karl, D.M. and John, S.G. 2024. Pelagic ecosystem research incubators (PERIcosms): optimized incubation tanks to investigate natural communities under long term, low nutrient, and low metal conditions. Limnol Oceanogr Methods, 22: 548-571. https:\/\/doi.org\/10.1002\/lom3.10628<\/a>. pdf<\/a><\/p>\n

Gleich, S.J.<\/span>, Hu, S.K.<\/span>, Krinos, A.I.<\/span> & Caron, D.A.<\/span> 2024. <\/span>Protistan community composition and metabolism in the North Pacific Subtropical Gyre: Influences of mesoscale eddies and depth<\/span>. Environmental Microbiology<\/i>, 26<\/span>(1<\/span>), e16556. https:\/\/doi.org\/10.1111\/1462-2920.16556<\/a>. pdf<\/a><\/p>\n

2023<\/b><\/h4>\n
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Caron, D.A., A.A.Y. Lie, T. Buckowski, J. Turner, K. Frabotta.\u00a0 2023.\u00a0 The effect of pH and salinity on the toxicity and growth of the Golden Alga, Prymnesium parvum<\/em>.\u00a0 Protist.\u00a0 174. https:\/\/doi.org\/10.1016\/j.protis.2022.125927<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Mitra, A., D.A. Caron, E. Faurec, K.J. Flynn, S. Gon\u00e7alves Leles, P.J. Hansen, G.B. McManus, F. Not, H. do Rosario Gomesi, L. Santoferrara, D.K. Stoeck and U. Tillmann.\u00a0 2023.\u00a0 The Mixoplankton Database \u2013 diversity of photo-phago-trophic plankton in form, function and distribution across the global ocean. Journal of Eukaryotic Microbiology.\u00a0 https:\/\/doi.org\/10.1111\/jeu.12972<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Sandoval-Belmar, M. J. Smith, A.R. Moreno, C. Anderson, R.M. Kudela, M. Sutula, F. Kessouri, D.A. Caron, F.P. Chavez, D. Bianchi.\u00a0 2023.\u00a0 A cross-regional examination of patterns and environmental drivers of Pseudo-nitzschia<\/em> harmful algal blooms along the California coast. Harmful Algae.\u00a0 126: 102435.\u00a0 DOI: https:\/\/doi.org\/10.1016\/j.hal.2023.102435<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Kenitz, K.M., E.C. Orenstein, C.R. Anderson, A.J. Barth, C. Brise\u00f1o-Avena, D.A. Caron, M.L. Carter, E. Eggleston, P.J.S. Franks, J.T. Fumo, J.S. Jaffe, K.A. McBeain, A. Odell, K. Seech, R. Shipe, J. Smith, D.A.A. Taniguchi, E.L. Venrick, A.D. Barton.\u00a0 2023.\u00a0 Convening expert taxonomists to build image libraries for training automated classifiers.\u00a0 Limnology and Oceanography Bulletin.\u00a0 32: 89-97. \u00a0DOI: https:\/\/doi.org\/10.1002\/lob.10584<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Smith, J., E. Eggleston,\u00a0<\/sup>M.D.A. Howard, S. Ryan, J. Gichuki,\u00a0<\/sup>K. Kennedy, A. Tyler, M. Beck, S. Huie, and D.A. Caron.\u00a0 2023.\u00a0 Historic and recent trends of cyanobacterial harmful algal blooms and environmental conditions in Clear Lake, California: a 70-year perspective.\u00a0 Submitted to Review in Elementa, Ecology and Earth Systems.\u00a0 DOI: 10.1525\/elementa.2022.00115. pdf<\/a><\/td>\n<\/tr>\n
Ollison, G.A., S.K. Hu, J.V. Hopper, B.P. Stewart, J.L. Beatty and D.A. Caron.\u00a0 2023.\u00a0 Physiology governing diatom vs. dinoflagellate bloom and decline in coastal Santa Monica Bay.\u00a0 Frontiers in Microbiology.\u00a0 DOI: 10.3389\/fmicb.2023.1287326. pdf<\/a><\/td>\n<\/tr>\n
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2022<\/b><\/h4>\n<\/td>\n<\/tr>\n

Follett, C.L., S. Dutkiewicza, Ribalet, F. Zakem, E., D. Caron, E.V. Armbrust and M.J. Follows.\u00a0 2022.\u00a0 Trophic interactions with heterotrophic bacteria limit the range of Prochlorococcus<\/em>.\u00a0 Proceedings of the National Academy of Science. 119: e2110993118.\u00a0 DOI: https:\/\/doi.org\/10.1073\/pnas.2110993118<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Zehr, J.P. and D.A. Caron.\u00a0 2022.\u00a0 Symbiosis in the ocean microbiome.\u00a0 In:\u00a0 Stahl, L.J. and M.S. Cretoiu (eds.).\u00a0 The marine microbiome, 2nd<\/sup> Edition, Springer Nature, Switzerland.\u00a0 pp. 535-577. pdf<\/a><\/td>\n<\/tr>\n
Gleich, S.J., J.A. Cram, J.L. Weissman and D.A. Caron.\u00a0 2022.\u00a0 NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data.\u00a0 ISME Communications. DOI: https:\/\/doi.org\/10.1038\/s43705-022-00106-7<\/a>. pdf<\/a><\/td>\n<\/tr>\n
Ollison, G., J. Hopper, S. Hu, B. Stewart, J. Smith, Jayme, J. Beatty, L. Rink and D.A. Caron.\u00a0 2022.\u00a0 Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight). Environmental Microbiology. DOI: 10.1111\/1462-2920.16137. pdf<\/a><\/td>\n<\/tr>\n
Rayas Fern\u00e1ndez, I.M., C.E. Denniston, D.A. Caron and G. Sukhatme.\u00a0 2022.\u00a0 Informative path planning to estimate quantiles for environmental analysis.\u00a0 IEEE Robotics and Automation Letters.\u00a0 7(4): 10280-10287. pdf<\/a><\/td>\n<\/tr>\n
Howard, M.D.A., J.C. Smith, D.A. Caron, R.M. Kudela, K Loftin, K. Hayashi, R. Fadness, S. Fricke, J. Kann, M. Roethler, A. Tatters and S. Theroux.\u00a0 2022.\u00a0 Integrative monitoring strategy for marine and freshwater Harmful Algal Blooms and toxins across the freshwater-to-marine continuum. Integrated Environmental Assessment and Management. DOI: 10.1002\/ieam.4651. pdf<\/a><\/td>\n<\/tr>\n
Kenkel, C.D., J. Smith, K.A. Hubbard, C. Chadwick; N. Lorenzen, A.O. Tatters and D.A. Caron.\u00a0 2022.\u00a0 Reduced representation sequencing accurately quantifies relative abundance and reveals population-level variation in Pseudo-nitzschia<\/em> spp.\u00a0 Harmful Algae.\u00a0 118: DOI: 10.1016\/j.hal.2022.102314<\/a>. pdf<\/a><\/td>\n<\/tr>\n
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2021<\/b><\/h4>\n<\/td>\n<\/tr>\n

Salhotra, G., C.E. Denniston, D.A. Caron, and G.S. Sukhatme.\u00a0 2021. \u00a0Adaptive sampling using POMDPs with domain-specific considerations. IEEE International Conference on Robotics and Automation (ICRA): 2385\u20132391, 2021. pdf<\/a><\/td>\n<\/tr>\n
Smith, J., D. Shultz, M.D.A. Howard, G. Robertson, V. Phonsiri, V. Renick, D.A. Caron, R.M. Kudela and K. McLaughlin.\u00a0 2021.\u00a0 Persistent Domoic Acid in Marine Sediments and Benthic Infauna along the Coast of Southern California.\u00a0 Harmful Algae.\u00a0 108: 102103.\u00a0 DOI: https:\/\/doi.org\/10.1016\/j.hal.2021.102103. pdf<\/a><\/td>\n<\/tr>\n
Ollison G.A., S.K. Hu, L.Y. Mesrop, E.F. DeLong and D.A. Caron.\u00a0 2021.\u00a0 Come rain or shine: Depth not season shapes the active protistan community at station ALOHA in the North Pacific Subtropical Gyre.\u00a0 Deep-Sea Res I 170: 103494.\u00a0 doi:https:\/\/doi.org\/10.1016\/j.dsr.2021.103494. pdf<\/a><\/td>\n<\/tr>\n
Howard M.D.A., R.M. Kudela, K. Hayashi, A.O. Tatters, D.A. Caron, S. Theroux, S. Oehrle, M. Roethler, A. Donovan, K. Loftin and Z. Laughrey.\u00a0 2021.\u00a0 Multiple co-occurring and persistently detected cyanotoxins and associated cyanobacteria in adjacent California lakes.\u00a0 Toxicon 192: 1-14.\u00a0 doi:https:\/\/doi.org\/10.1016\/j.toxicon.2020.12.019. pdf<\/a><\/td>\n<\/tr>\n
Coesel S.N., B.P. Durham, R.D. Groussman, S.K. Hu, D.A. Caron, R.L. Morales, F. Ribalet and E.V. Armbrust.\u00a0 2021.\u00a0 Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities.\u00a0 Proc Nat Acad Sci 118: e2011038118.\u00a0 doi:10.1073\/pnas.2011038118. pdf<\/a><\/td>\n<\/tr>\n
Tatters A.O., J. Smith, R.M. Kudela, K. Hayashi, M.D.A. Howard, A.R. Donovan, K.A. Loftin and DA. Caron.\u00a0 2021.\u00a0 The tide turns: Episodic and localized cross-contamination of a California coastline with cyanotoxins.\u00a0 Harmful Algae 103: 102003.\u00a0 doi:https:\/\/doi.org\/10.1016\/j.hal.2021.102003. pdf<\/a><\/td>\n<\/tr>\n
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2020<\/b><\/h4>\n<\/td>\n<\/tr>\n

Denniston, C.E., A. Kumaraguru, D.A. Caron and G.S. Sukhatme.\u00a0 2020.\u00a0 Incorporating noise into adaptive sampling.\u00a0 In: Siciliano, B., C. Laschis and K. Oussama (Eds.). 17th International Symposium on Experimental Robotics (ISER 2020), Dec 2020 pp. 198-208. pdf<\/a><\/td>\n<\/tr>\n
Connell, P.E., F. Ribalet, E.V. Armbrust, A. White and D.A. Caron.\u00a0 2020.\u00a0 Diel oscillations in feeding strategies of heterotrophic and mixotrophic nanoplankton in the North Pacific Subtropical Gyre.\u00a0 Aquatic Microbial Ecology.\u00a0 85: 167-181. pdf<\/a><\/td>\n<\/tr>\n
Stauffer, B.A., G.S. Sukhatme and D.A. Caron.\u00a0 2020.\u00a0 Physical and biogeochemical factors driving spatially heterogeneous phytoplankton blooms in nearshore waters of Santa Monica Bay, USA.\u00a0 Estuaries and Coasts.\u00a0 DOI: 10.1007\/s12237-020-00704-5. pdf<\/a><\/td>\n<\/tr>\n
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2019<\/b><\/h4>\n<\/td>\n<\/tr>\n

Smith, J.C., A. Lie, E.L. Seubert, N. Crowley, G. Robertson and D.A. Caron.\u00a0 2019.\u00a0 Co-occurring dissolved algal toxins observed at multiple monitoring stations off southern California via Solid Phase Adsorption Toxin Tracking (SPATT).\u00a0 Toxicon.\u00a0 171: 62-65. pdf<\/a><\/td>\n<\/tr>\n
Boeuf, D., B.R. Edwards, J.M. Eppley, S.K. Hu, K.E. Poff, A.E. Romano, D.A. Caron, D.M. Karl and E.F. DeLong.\u00a0 Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the open ocean.\u00a0 Submitted to Proceedings of the National Academy of Sciences of the United States of America. DOI: 10.1073\/pnas.1903080116 pdf<\/a><\/td>\n<\/tr>\n
Liu, Z., L.Y. Mesrop, S.K. Hu and D.A. Caron.\u00a0 2019.\u00a0 Transcriptome of Thalassicolla nucleata holobiont reveals details of a radiolarian symbiotic relationship.\u00a0 Frontiers in Marine Science.\u00a0 DOI: 10.3389\/fmars.2019.00284 pdf<\/a><\/td>\n<\/tr>\n
Tatters, A.O., M.D.A. Howard, C. Nagoda, A.B. Fetscher, R.M. Kudela and D.A. Caron.\u00a0 2019.\u00a0 Heterogeneity of toxin-producing cyanobacteria and cyanotoxins in coastal watersheds of Southern California.\u00a0 Estuaries and Coasts. DOI: 10.1007\/s12237-019-00546-w. pdf<\/a><\/td>\n<\/tr>\n
Pasulka, A., S.K. Hu, P.D. Countway, K.J. Coye, S.C. Cary, K.B. Heidelberg and D.A. Caron.\u00a0 2019.\u00a0 SSU-rRNA gene sequencing survey of benthic microbial eukaryotes from Guaymas Basin hydrothermal vent.\u00a0 Journal of Eukaryotic Microbiology.\u00a0 66: 637-653. pdf<\/a><\/td>\n<\/tr>\n
Busch, M.,\u00a0 D.A. Caron and S. Moorthi.\u00a0 2019.\u00a0 Growth and grazing control of the dinoflagellate\u00a0Lingulodinium polyedrum<\/em>\u00a0in a natural plankton community.\u00a0 Marine Ecology Progress Series.\u00a0 611: 45-58.\u00a0pdf<\/a><\/td>\n<\/tr>\n
Leles, S.G., A. Mitra, K.J. Flynn, U. Tillmann, D. Stoecker, H.J. Jeong, J. Burkholder, P.J. Hansen, D.A. Caron, P. Glibert, G. Hallefraef, J. Raven, R. Sanders and M. Zubkov.\u00a0 2019.\u00a0 Sampling bias misrepresents the biogeographic significance of constitutive mixotrophs across global oceans.\u00a0 Global Ecology and Biogeography. DOI: 10.1111\/geb.12853.\u00a0pdf<\/a><\/td>\n<\/tr>\n
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2018<\/b><\/h4>\n<\/td>\n<\/tr>\n

Smith, J., P. Connell, R.H. Evans, A.G. Gellene, M.D.A. Howard, B.H. Jones, S. Kaveggia, L. Palmer, A. Schnetzer, B.N. Seegers, E.L. Seubert, A.O. Tatters and D.A. Caron.\u00a0 2018.\u00a0 A decade and a half of Pseudo-nitzschia<\/em> spp. and domoic acid along the coast of southern California. Harmful Algae.\u00a0\u00a0DOI: https:\/\/doi.org\/10.1016\/j.hal.2018.07.007 pdf<\/a><\/td>\n<\/tr>\n
Caron D.A. and S.K. Hu. 2018. Are we overestimating protistan diversity in nature?\u00a0 Trends in Microbiology.\u00a0DOI:https:\/\/doi.org\/10.1016\/j.tim.2018.10.009 pdf<\/a><\/td>\n<\/tr>\n
Hu, S.K. P.E. Connell, L.Y. Mesrop and D.A. Caron.\u00a0 2018.\u00a0 A hard day\u2019s night: diel shifts in microbial eukaryotic activity in the north pacific subtropical gyre.\u00a0 Frontiers in Marine Science. DOI: 10.3389\/fmars.2018.00351 pdf<\/a><\/td>\n<\/tr>\n
Connell, P.E., G. Meisterhans, C. Michel, K.R. Arrigo and D.A. Caron.\u00a0 2018.\u00a0 Phytoplankton and bacterial dynamics in the Chukchi Sea during the spring-summer transition.\u00a0 Marine Ecology Progress Series.\u00a0 602: 49-62. pdf<\/a><\/td>\n<\/tr>\n
Bowers, H.A., J.P. Ryan, K. Hayashi, A.L. Woods, R. Marin III, G.J. Smith, K.A. Hubbard, G.J. Doucette, C.M. Mikulski, A.G. Gellene, R.M. Kudela, D.A. Caron, J.M. Birch, C.A. Scholin.\u00a0 2018.\u00a0 Diversity and toxicity of Pseudo-nitzschia species in Monterey Bay: perspectives from targeted and adaptive sampling.\u00a0 Harmful Algae.\u00a0 78: 129-141. pdf<\/a><\/td>\n<\/tr>\n
Turk-Kubo, K.A., P. Connell, D.A. Caron, M.E. Hogan, H.M. Farnelid and Jonathan P. J.P. Zehr.\u00a0 2018.\u00a0 In situ diazotroph population dynamics under different resource ratios in the North Pacific Subtropical Gyre.\u00a0 Frontiers in Microbiology.\u00a0 DOI: 10.3389\/fmicb.2018.01616. pdf<\/a><\/td>\n<\/tr>\n
Medina, F.F., J. Bailey, F. Corsetti, M. Moldowan and D.A. Caron.\u00a0 2018.\u00a0 Assessing biomarker syngeneity: an in situ approach using monoclonal antibodies to detect squalene.\u00a0 Organic Geochemistry.\u00a0 DOI: https:\/\/doi.org\/10.1016\/j.orggeochem.2018.05.006. pdf<\/a><\/td>\n<\/tr>\n
Hu, S.K., Z. Liu, H. Alexander, V. Campbell, P.E. Connell, S.T. Dyhrman, K.B. Heidelberg, and D.A. Caron.\u00a0 2018.\u00a0 Shifting metabolic priorities among key protistan taxa within and below the euphotic zone.\u00a0 Environmental Microbiology. DOI: https:\/\/doi.org\/10.1111\/1462-2920.14259. pdf<\/a><\/td>\n<\/tr>\n
Carpenter, K.J., M. Bose, L. Polerecky, A. Lie, K.B. Heidelberg, D.A. Caron.\u00a0 2018.\u00a0 Single-cell view of carbon and nitrogen acquisition in the mixotrophic alga Prymnesium parvum (Haptophyta) inferred from stable isotope tracers and NanoSIMS.\u00a0 Frontiers in Marine Science (Marine Ecosystem Ecology).\u00a0 5:157.\u00a0 DOI: 10.3389\/fmars.2018.00157. pdf<\/a><\/td>\n<\/tr>\n
Lie A.A.Y., Z. Liu, R. Terrado, A.O. Tatters, K.B. Heidelberg and D.A. Caron DA.\u00a0 2018.\u00a0 A tale of two mixotrophic chrysophytes: insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression.\u00a0 PLoS ONE 13(2): e0192439. https:\/\/doi.org\/10.1371\/journal.pone.0192439. pdf<\/a><\/td>\n<\/tr>\n
Smith, J., A.G. Gellene, K.A. Hubbard, H.A. Bowers, R.M. Kudela, K. Negrey and D.A. Caron. 2018.\u00a0 Pseudo-nitzschia species composition varies concurrently with domoic acid concentrations during two different blooms events in the Southern California Bight.\u00a0 Journal of Plankton Research.\u00a0 40: 29-45. pdf<\/a><\/td>\n<\/tr>\n
Tatters, A.O., A. Schnetzer, K. Xu, N. Walworth, F. Fu, J.L. Spackeen, R.E. Sipler, E.M. Bertrand, J.B. McQuaid, A.E. Allen, D.A. Bronk, K. Gao, J. Sun, D.A. Caron and D.A. Hutchins.\u00a0 2018.\u00a0 Interactive effects of temperature, CO2, and nitrogen source on a coastal California diatom assemblage.\u00a0 Journal of Plankton Research.\u00a0 40: 151-164.\u00a0pdf<\/a><\/td>\n<\/tr>\n
Jones, A.J. K.D. Hambright and D.A. Caron. \u00a02018. \u00a0Ecological patterns among bacteria and microbial eukaryotes derived from network analyses in a low salinity lake. \u00a0Microbial Ecology. \u00a0DOI 10.1007\/s00248-017-1087-7.\u00a0pdf<\/a><\/td>\n<\/tr>\n
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2017<\/b><\/h4>\n<\/td>\n<\/tr>\n

Leles, S., A. Mitra, K. Flynn, D. Stoecker, P. Hansen, A. Calbet, G. McManus, R. Sanders, D. Caron, F. Not, G. Hallegraeff, P. Paraskevi, J. Raven, M. Johnson, P. Glibert and S. V\u00e5ge. \u00a02017. \u00a0Oceanic protists with different forms of acquired phototrophy display diverse biogeographies and abundance. \u00a0Proceedings of the Royal Society B. \u00a0284: 20170664. \u00a0DOI: 10.1098\/rspb.2017.0664. pdf<\/a><\/td>\n<\/tr>\n
Stauffer, B.A., A.G. Gellene, D. Rico, C. Sur and D.A. Caron. 2017. Grazing of the heterotrophic dinoflagellate\u00a0Noctiluca scintillans\u00a0<\/em>on dinoflagellate and raphidophyte prey. Aquatic Microbial Ecology. 80: 193-207. \u00a0pdf<\/a><\/td>\n<\/tr>\n
Wilson, S.T., F.O. Aylward, F. Ribalet, B. Barone, J.R. Casey, P.E. Connell, J.A. Eppley, S. Ferr\u00f3n, A.E. Romano, K.A. Turk-Kubo, A. Visloval, E.V. Armburst, D.A. Caron, M.J. Church, J.P. Zehr, D.M. Karl and E.F. DeLong. 2017. Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium\u00a0Crocosphaera<\/em>. Nature Microbiology. 2: 17118. \u00a0pdf<\/a><\/td>\n<\/tr>\n
Howard, M.D.A., C. Nagoda, R.M. Kudela, K. Hayashi, A. Tatters, D.A. Caron., L. Busse, J. Brown, M.A. Sutula, E.D. Stein. 2017. Microcystin prevalence throughout lentic waterbodies in Coastal Southern California. Toxins. 9: 231. DOI: 10.3390\/toxins907023. \u00a0pdf<\/a><\/td>\n<\/tr>\n
Terrado, R., A.L. Pasulka, A.A.Y. Lie, V.J. Orphan, K.B. Heidelberg and D.A. Caron. 2017. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis. The ISME Journal. DOI: 10.1038\/ismej.2017.68. pdf<\/a><\/td>\n<\/tr>\n
Berney, C., A. Ciuprina, S. Bender, J. Brodie, V. Edgcomb, E. Kim, J. Rajan, L. Wegener Parfrey, S. Adl, S. Audic, D. Bass, D.A. Caron, G. Cochrane, L. Czech, M. Dunthorn, S. Geisen, F. Oliver Gl\u00f6ckner, F. Mah\u00e9, C. Quast, J.Z. Kaye, A.G.B. Simpson, A. Stamatakis, J. del Campo, P. Yilmaz, C. de Vargas. 2017. UniEuk: time to speak a common language in protistology! Journal of Euakryotic Microbiology. 64: 407-411. pdf<\/a><\/td>\n<\/tr>\n
Lie, A.A.Y., Z. Liu, R. Terrado, A.O. Tatters, K.B. Heidelberg and D.A. Caron. 2017. Effect of light and prey availability on gene expression of the mixotrophic chrysophyte,\u00a0Ochromonas\u00a0<\/em>sp. BMC Genomics. 18: 163. DOI: 10.1186\/s12864-017-3549-1. pdf<\/a><\/td>\n<\/tr>\n
Seubert, E.L., A.G. Gellene, V. Campbell, J. Smith, G. Robertson and D.A. Caron. 2017. Incubation experiments to determine the response of a natural plankton community to treated sewage effluent. Estuarine, Coastal and Shelf Science. 186: 250-262. pdf<\/a><\/td>\n<\/tr>\n
Seegers, B., E.N. Teel, R.M. Kudela, D.A. Caron and B.H. Jones. 2017. Glider and remote sensing observations of the upper layer response to an extended shallow coastal diversion of wastewater effluent. Estuarine, Coastal and Shelf Science. 186: 198-208. pdf<\/a><\/td>\n<\/tr>\n
Connell, P.E., V. Campbell, A.G. Gellene, S.K. Hu and D.A. Caron. 2017. Planktonic food web structure at a coastal time-series site: II. Spatiotemporal variability of microbial trophic activities. Deep-Sea Research I. 121: 210-223. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A., P.E. Connell, R.A. Schaffner, A. Schnetzer, J.A. Fuhrman, P.D. Countway and D.Y. Kim. 2017. Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass. Deep-Sea Research I. 121: 14-29. pdf<\/a><\/td>\n<\/tr>\n
Stoecker, D.K., P.J. Hansen, D.A. Caron and A. Mitra. 2017. Mixotrophy in the marine plankton. Annual Reviews of Marine Sciences. 9: 311-335. pdf<\/a><\/td>\n<\/tr>\n
Tatters, A.O., M.D.A. Howard, C. Nagoda, L. Busse, A.G. Gellene, D.A. Caron. 2017. Multiple stressors at the land-sea interface: cyanotoxins at the land-sea interface in the Southern California Bight. Toxins. 9(30): 95. DOI: 10.3390\/toxins9030095. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A. 2017. Acknowledging and incorporating mixed nutrition into aquactic protistan ecology, finally. Environmental Microbiology Reports. 9: 41-43. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A., A.G. Gellene, J. Smith, E.L. Seubert, V. Campbell, G.S. Sukhatme, B. Seegers, B.H. Jones, A.Y. Lie, M.D.A. Howard, R.M. Kudela, K. Hayashi, J. Ryan, J. Birch, E. Demir-Hilton, K. Yamahara, C. Scholin, M. Mengel and G. Robertson. 2017. Response of phytoplankton and bacterial biomass during a wastewater effluent diversion into nearshore coastal waters. Estuarine, Coastal and Shelf Science. 186: 223-236. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A., R.J. Gast and M.\u00c8. Garneau. 2017. Sea ice as a habitat for micrograzers. In: Thomas, D.N. and G.S. Dieckmann (eds.), Sea Ice, Third Edition. John Wiley & Sons, West Sussex, Chapter 15. Pages: 370-393. pdf<\/a><\/td>\n<\/tr>\n
Liu, Z., S.K. Hu, V. Campbell, A.O. Tatters, K.B. Heidelberg and D.A. Caron. 2017. Single-cell transcriptomics of small microbial eukaryotes: insights and limitations. The ISME Journal. DOI: 10.1038\/ismej.2016.190. pdf<\/a><\/td>\n<\/tr>\n
\n

2016<\/b><\/h4>\n<\/td>\n<\/tr>\n

Subbaraya, S., A. Breitenmoser, A. Molchanov, J. Mueller, C. Oberg, D.A. Caron, G. Sukhatme. 2016. Design of Lagrangian drifters for ocean monitoring. IEEE Robotics & Automation Magazine. DOI: 10.1109\/MRA.2016.2535154. pdf<\/a>
\n<\/a><\/td>\n<\/tr>\n
Caron, D.A., H. Alexander, A.E., J. M. Archibald, E.V. Armbrust, C. Bachy, A. Bharti, C.J. Bell, S.T. Dyhrman, S. Guida, K.B. Heidelberg, J.Z. Kaye, J. Metzner, S.R. Smith and A.Z. Worden. 2016. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews Microbiology. DOI: 10.1038\/nrmicro.2016.160.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Hu S.K., V. Campbell, P. Connell, A.G. Gellene, Z. Liu, R.Terrado and D.A. Caron. 2016. Protistan diversity and activity inferred from RNA and DNA at a coastal ocean site in the eastern North Pacific.<\/em> FEMS Microbiol. Ecol.<\/em> 92(4)\u00a0 DOI: 10.1093\/femsec\/fiw050.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Mitra, A., K.J. Flynn, U. Tillmann, J. Raven, D. Caron, D. Stoecker, F. Not, P. Hansen, G. Hallegraeff,\u00a0 R. Sanders, S. Wilken, G. McManus, M. Johnson, P. Pitta, S. V\u00e5ge, R. Berje, A. Calbet, F. Thingstad, J.J. Jeong, J. Burkholder, P. Glibert, E. Gran\u00e9li and V. Lundgren.\u00a0 2016.\u00a0 Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition; incorporation of diverse mixotrophic strategies. Protist.\u00a0 167: 106-120.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Liu, Z., V. Campbell, K. Heidelberg and D.A. Caron.\u00a0 2016.\u00a0 Gene expression characterizes\u00a0 different nutritional strategies among three mixotrophic protists.\u00a0 FEMS Microbiology Ecology. 92: fiw106.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Martiny, A.C., A. Talarmin, C. Mouginot, J. Lee, J. Huang, A. Gellene and D.A. Caron.\u00a0 2016.\u00a0 Biogeochemical interactions control a temporal succession in the elemental composition of marine communities. \u00a0Limnology and Oceanography.\u00a0 61: 531-542. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A.\u00a0 2016.\u00a0 Mixotrophy stirs up our understanding of marine food webs.\u00a0 Proceedings of the Academy of National Sciences of the U.S.\u00a0 113 (11): 2806-2808.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A.\u00a0 2016.\u00a0 The rise of Rhizaria.\u00a0 Nature News & Views.\u00a0 DOI: 10.1038\/nature17892.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Bialonski, S., D.A. Caron, U. Feudel, H. Kantz and S.D. Moorthi.\u00a0 2016.\u00a0 Phytoplankton dynamics in the Southern California Bight indicate a complex mixture of transport and biology. Marine Ecology Progress Series\u00a0 38: 1077-1091.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A., M. Echt, J. Folsom, E.L. Seubert, A.O. Tatters and A.G. Gellene.\u00a0 2016. Managing Algal Blooms at a Botanical Garden Lake: A Success Story.\u00a0 North American Lake Management Society (NALMS) Lakeline, Spring. Pages: 17-21.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2015<\/b><\/h4>\n<\/td>\n<\/tr>\n

Liu, Z., A.C. Jones, V. Campbell, K.D. Hambright, K.B. Heidelberg and D.A. Caron, Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum<\/em>, responds to prey availability. Frontiers in Microbiology<\/em> 6<\/b> (2015).\u00a0 DOI: 10.3389\/fmicb.2015.00319.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Seegers, B.N., J.M. Birch, R. Marin III, C.A. Scholin, D.A. Caron, E.L. Seubert, M.D.A. Howard, G.L. Roberston and B.H. Jones.\u00a0 2015.\u00a0 Subsurface seeding of surface harmful algal blooms observed through the integration of autonomous gliders, moored Environmental Sample Processors, and satellite remote sensing in Southern California.\u00a0 Limnology and Oceanography.\u00a0 60: 754-764.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Hu, S., Z. Liu, A.A. Y. Lie, P.D. Countway, D.Y. Kim, A.C. Jones, R.J. Gast, S.C. Cary, E.B. Sherr, B.F. Sherr and D.A. Caron. 2015. Estimating protistan diversity using highthrough putsequencing. Journal of Eukaryotic Microbiology. 62: 688-693..\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Das, J., F. Py, J. Harvey, J. Ryan, A. Gellene, R. Grahamk, D.A. Caron, K. Rajan and G,S. Sukhatme.\u00a0 2015.\u00a0 Data-driven robotic sampling for marine ecosystem monitoring.\u00a0 International Journal of Robotics Research.\u00a0 DOI: 10.1177\/0278364915587723.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Liu, Z., A.E. Koid, R. Terrado, V. Campbell, D.A. Caron and K.B. Heidelberg.\u00a0 2015. \u00a0Changes in gene expression of Prymnesium parvum<\/em> due to nitrogen and phosphorus limitation.\u00a0 Frontiers in Microbiology, Aquatic Microbiology. Vol. 6.\u00a0 DOI: 10.3389\/fmicb.2015.00631. pdf<\/a><\/td>\n<\/tr>\n
Fuhrman, J.A. and D.A. Caron. (2015) Heterotrophic planktonic microbes: virus, bacteria, archaea, and protozoa, in Manual of Environmental Microbiology, Fourth Edition<\/em>, Yates MV, et al., Editors. 2015, American Society of Microbiology. p. 4.2.2-1 – 4.2.2-34.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2014<\/b><\/h4>\n<\/td>\n<\/tr>\n

Howard, M.D.A.,\u00a0 M. Sutula, D.A. Caron, Y. Chao, J.D. Farrara, H. Frenzel, B. Jones, G. Robertson, K. McLaughlin and A. Sengupta. <\/sup>\u00a02014.\u00a0 Anthropogenic nutrient sources rival natural sources on small scales in the coastal waters of the Southern California Bight.\u00a0 Limnology and Oceanography.\u00a0 59: 285-297. pdf<\/a><\/td>\n<\/tr>\n
Chow, C.-E., D.Y. Kim, R. Sachdeva, D.A. Caron and J.A. Fuhrman.\u00a0 2014.\u00a0 Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists.\u00a0 The ISME Journal.\u00a0 8: 816-829. pdf<\/a><\/td>\n<\/tr>\n
Keeling, P.J. and 78 others.\u00a0 2014.\u00a0 The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP):\u00a0 Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. \u00a0PLOS Biology.\u00a0 12: e1001889.<\/td>\n<\/tr>\n
Koid, A.E., A, Jones, Z. Liu, D.A. Caron and K.B. Heidelberg.\u00a0 2014.\u00a0 Comparative transcriptomics of four prymnesiophyte algae.\u00a0 PLoS One. \u00a09: e97801.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Seubert, E.L., M.D.A. Howard, R.M. Kudela, T.N. Stewart, R.W. Litaker, R. Evans and D.A. Caron.\u00a0 2014.\u00a0 Development, comparison and validation using ELISAs for the analysis of domoic acid in California sea lion body fluids. \u00a0Journal of AOAC International.\u00a0 97: 345-355. pdf<\/a><\/td>\n<\/tr>\n
Lie, A.A.Y., Z. Liu, S. Hu, A.C. Jones, D.Y. Kim, P.D. Countway, L.A. Amaral-Zettler, R.J. Gast, E.B. Sherr4<\/sup>, B.F. Sherr4<\/sup>, S.C. Cary and D.A. Caron.\u00a0 2014.\u00a0 Investigating microbial eukaryote diversity: Insights from a comparison of pyrotag and full-length sequences of 18S rDNA from a global survey.\u00a0 Applied and Environmental Microbiology.\u00a0 80: 4363-4373. pdf<\/a><\/td>\n<\/tr>\n
Kim, D.Y., P.D. Countway, A.C. Jones, A. Schnetzer, W. Yamashita, C. Tung and D.A. Caron.\u00a0 2014.\u00a0 Monthly, seasonal and interannual variability of microbial eukaryote assemblages within and below the euphotic zone in the eastern North Pacific.\u00a0 The ISME Journal. \u00a08: 515-530.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2013<\/b><\/h4>\n<\/td>\n<\/tr>\n

Rose, J.M., E. Fitzpatrick, A. Wang, R.J. Gast and D.A. Caron.\u00a0 2013.\u00a0 Low temperature constrains growth rates but not instantaneous grazing rates of Antarctic microzooplankton.\u00a0 Polar Biology. \u00a036: 645\u2013659<\/td>\n<\/tr>\n
Caron, D.A. and D.A. Hutchins.\u00a0 2013.\u00a0 The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps.\u00a0 Journal of Plankton Research. \u00a035: 235-252.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Tatters, A. O., A. Schnetzer, F. Fu, A. Y. A. Lie, D. A. Caron, and D. A. Hutchins. 2013. Short- versus long-term responses to changing CO2<\/sub> in a coastal dinoflagellate bloom: implications for interspecific competitive interactions and community structure. Evolution 67<\/b>:1879-1891.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Tatters, A.O., M.Y. Roleda, A. Schnetzer, F. Fu, C. Hurd, P.W. Boyd, D.A. Caron, A.A.Y. Lie, L.J. Hoffmann and D.A. Hutchins.\u00a0 2013.\u00a0 Long-term conditioning of a temperate marine diatom community to acidification and warming. Philosophical Transactions of the Royal Society B.\u00a0 368: 20120437.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Coyne, K. J., P. D. Countway, C. A. Pilditch, C. K. Lee, D. A. Caron, and S. C. Cary. 2013. Diversity and Distributional Patterns of Ciliates in Guaymas Basin Hydrothermal Vent Sediments. Journal of Eukaryotic Microbiology.\u00a0 60: 433-44.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A.\u00a0 2013.\u00a0 Towards a molecular taxonomy for protists: benefits, risks and applications in plankton ecology. \u00a0Journal of Eukaryotic Microbiology. 60: 407-413.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Lie, A.A.Y., D.Y. Kim, A. Schnetzer and D.A. Caron.\u00a0 2013.\u00a0 Small-scale temporal and spatial variations in protistan community composition at the San Pedro Ocean Time-series station off the coast of southern California.\u00a0 Aquatic Microbial Ecology. 70: 93\u2013110. pdf<\/a><\/td>\n<\/tr>\n
Schnetzer, A., B.H. Jones, R.A. Schaffner, I. Cetinic, E. Fitzpatrick, P.E. Miller and D.A. Caron.\u00a0 2013.\u00a0 Coastal upwelling linked to toxic Pseudo-nitzschia<\/em> australis<\/em> blooms in Los Angeles coastal waters, 2005 \u2013 2007.\u00a0 Journal of Plankton Research.\u00a0 35: 1080-1092.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Jones, A.C., T.S. Vivian Liao, F.Z. Najar, B.A. Roe, K.D. Hambright and D.A. Caron.\u00a0 2013.\u00a0 Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem.\u00a0 Environmental Microbiology. 15: 2557\u20132572.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Seubert, E.L., A.G. Gellene, M.D.A. Howard, P. Connell, M. Ragan, B.H. Jones, J. Runyan, D.A. Caron.\u00a0 2013.\u00a0 Seasonal and annual dynamics of harmful algae and algal toxins revealed through weekly monitoring at two coastal ocean sites off southern California, USA.\u00a0 Environmental Sciences and Pollution Research.\u00a0 20: 6878\u20136895.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2012<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D.A. P.D. Countway, A.C. Jones, D.Y. Kim, A. Schnetzer.\u00a0 Marine Protistan Diversity. 2012. Marine Protistan Diversity. Annual Review of Marine Science 4:467-493.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Howard, M.D.A., A.C. Jones, A. Schnetzer, P.D. Countway, C.R. Tomas, R.M. Kudela, K. Hayashi, P. Chia and D.A. Caron.\u00a0 2012.\u00a0 Quantitative real-time PCR for Cochlodinium fulvescens<\/em> (Dinophyceae), a potentially harmful dinoflagellate from California coastal waters.\u00a0 Journal of Phycology.\u00a0 48:\u00a0 384-393.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Lewitus A.J., R.A. Horner, D.A. Caron, E. Garcia-Mendoza, B.M. Hickey, M. Hunter, D.D. Huppert, D. Kelly, R.M. Kudela, G.W. Langlois, J.L. Largier, E.J. Lessard, R. RaLonde, J.E. Rensell, P.G. Strutton, V.L. Trainer, J.F. Tweddle.\u00a0 2012.\u00a0 Harmful algal blooms in the North American west coast region:\u00a0 history, trends, causes, and impacts.\u00a0 Harmful Algae. 19: 133-159.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Stauffer, B.A., A.G. Gellene, A. Schnetzer, E.L. Seubert, C. Oberg, G.S. Sukhatme, D.A. Caron.\u00a0 2012.\u00a0 An oceanographic, meterological and biological \u2018perfect storm\u2019 yields a massive fish kill.\u00a0 Marine Ecology Progress Series. 468: 231-243.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Stauffer, B.A., A. Schnetzer, A.G. Gellene, C. Oberg, G.S. Sukhatme, D.A. Caron.\u00a0 2012.\u00a0 Effects of an acute hypoxia event on microplankton community structure in a coastal harbor of Southern California.\u00a0 Estuaries and Coasts. \u00a036: 135-148.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Seubert, E.L., S. Trussell, J. Eagleton, A. Schnetzer, I. Cetini\u0107, P. Lauri, B.H. Jones and D.A. Caron.\u00a0 2012.\u00a0 Algal toxins and reverse osmosis desalination operations: laboratory bench testing and field monitoring of domoic acid, saxitoxin, brevetoxin and okadaic acid.\u00a0 Water Research.\u00a0 46: 6563-6573.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Kim, D.Y., P.D. Countway, W. Yamashita and D.A. Caron.\u00a0 2012.\u00a0 A combined sequence-based and fragment-based characterization of microbial eukaryote assemblages provides taxonomic context for the Terminal Restriction Fragment Length Polymorphism (T-RFLP) method.\u00a0 Journal of Microbiological Methods. \u00a091:527-536.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2011<\/b><\/h4>\n<\/td>\n<\/tr>\n

Schnetzer, A., S.D. Moorthi, P.D. Countway R.J. Gast, I.C. Gilg and D.A. Caron.\u00a0 2011.\u00a0 Depth matters: microbial eukaryote diversity and community structure in the eastern North Pacific revealed through environmental gene libraries.\u00a0 Deep-Sea Research I.\u00a0 58:16-26. pdf<\/a><\/td>\n<\/tr>\n
Sun, J. D.A. Hutchins, Y. Feng, E.L. Seubert, D.A. Caron and F.-X. Fu.\u00a0 2011.\u00a0 Effects of changing pCO2<\/sub> and phosphate availability on domoic acid production and physiology of the marine harmful bloom diatom Pseudo-nitzschia<\/em> multiseries<\/em>.\u00a0 Limnology and Oceanography\u00a0 56: 829-840.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Golubchik, L., D.A. Caron, A. Das, A. Dhariwal, R. Govindan, D. Kempe, C. Oberg, A. Sharma, B. Stauffer, G. Sukhatme, and B. Zhang.\u00a0 2011.\u00a0 AMBROSia: An overview and recent results.\u00a0 Journal of Algorithms and Computational Technology: 5:\u00a0 583-599.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Kim, D.Y., P.D. Countway, R.J. Gast and D.A. Caron.\u00a0 2011.\u00a0 Rapid shifts in protistan community structure and composition during bottle incubations.\u00a0 Microbial Ecology.\u00a0 62: 383-398.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Steele, J.A., P.D. Countway, L. Xia, P.D.Vigil, J.M. Beman, D.Y. Kim, C.-E. T. Chow, R. Sachdeva, A.C. Jones, M.S. Schwalbach, J.M. Rose, I. Hewson, A. Patel, F. Sun, D.A. Caron, J.A. Fuhrman.\u00a0 2011. \u00a0Marine bacterial, archaeal, and protistan assocation networks reveal ecological linkages.\u00a0 The ISME Journal. \u00a05: 1414-1425.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Garneau, M.-\u00c8., A. Schnetzer, P.D. Countway, A.C. Jones, E.L. Seubert and D.A. Caron. \u00a02011.\u00a0 Seasonal dynamics of the toxic dinoflagellate Alexandrium catenella<\/em> at Redondo Beach, California, examined by quantitative PCR.\u00a0 Applied and Environmental Microbiology.\u00a0 77: 7669\u20137680.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2010<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D.A. and R.J. Gast.\u00a0 2010.\u00a0 Heterotrophic protists associated with sea ice.\u00a0 In: Thomas, D.N. and G.S. Dieckmann (eds.).\u00a0 Sea Ice.\u00a0 Second Edition, Wiley-Blackwell, Oxford, pp. 327-356.<\/td>\n<\/tr>\n
Caron, D.A. Garneau, M.-E., E. Seubert, M.D.A. Howard, D. Darjany, A. Schnetzer, I. Cetinic, G. Filteau, P. Lauri, B. Jones and S. Trussell.\u00a0 2010.\u00a0 Harmful algae and their potential impacts on desalination operations off southern California.\u00a0 Water Research.\u00a0 44: 385-416.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Gilg, I.C., L.A. Amaral-Zettler, P.D. Countway, S. Moorthi, A. Schnetzer and D.A. Caron.\u00a0 2010.\u00a0 Phylogenetic affiliations of mesopelagic acantharia and acantharian-like environmental 18S rRNA genes off the Southern California coast.\u00a0 Protist. 161: 197\u2013211. pdf<\/a><\/td>\n<\/tr>\n
Countway, P.D., P. Vigil, A. Schnetzer, S. Moorthi and D.A. Caron.\u00a0 2010. \u00a0Seasonal Analysis of Protistan Community Structure and Diversity at the USC Microbial Observatory (San Pedro Channel, Pacific Ocean).\u00a0 Limnology and Oceanography.\u00a0 55: 2381-2396.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Fitzpatrick, E., D.A. Caron and A. Schnetzer. 2010.\u00a0 Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia<\/em> species.\u00a0 Marine Biology.\u00a0 157: 1161-1169.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Smith, R.N., J. Das, H. Heidarsson, A.M. Pereira, F. Arrichiello, I. Cetinic, L. Darjany, M.-E. Garneau, M.D. Howard, C. Oberg, M. Ragan, E. Seubert, E.C. Smith, B.A. Stauffer, A. Schnetzer, G. Toro-Farmer, D.A. Caron B.H. Jones and G.S. Sukhatme.\u00a0 2010.\u00a0 USC CINAPS builds bridges: observing and monitoring the Southern California Bight.\u00a0 IEEE Robotics and Automation Magazine.\u00a0 17: 20-30.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Smith, R., A. de Menezes Pereira, Y. Chao, P. Li, D.A. Caron, B. Jones, and G. Sukhatme.\u00a0 2010.\u00a0 Autonomous underwater vehicle trajectory design coupled with predictive ocean models: a case study.\u00a0 IEEE International Conference on Robotics and Automation 2010.\u00a0 pp. 4770-4777.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Smith, R., Y. Chao, D.A. Caron, B. Jones, and G. Sukhatme.\u00a0 2010.\u00a0 Cooperative multi-AUV tracking of phytoplankton blooms based on ocean model predictions.\u00a0 Oceans ’10 – IEEE Sydney, Sydney, Australia.\u00a0 Oceans ’10 – IEEE Sydney.\u00a0 Sydney, Australia.\u00a0 May 2010.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Das, J., K. Rajan, S. Frolov, J. Ryan, F. Py, D.A. Caron, and G. Sukhatme.\u00a0 2010.\u00a0 Towards marine bloom trajectory prediction for AUV mission planning.\u00a0 IEEE International Conference on Robotics and Automation, May 2010.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Smith, R., Y. Chao, P. Li, D.A. Caron, B. Jones, and G. Sukhatme.\u00a0 2010.\u00a0 Planning and implementing trajectories for autonomous underwater vehicles to track evolving ocean processes based on predictions from a regional ocean model.\u00a0 International Journal of Robotics Research.\u00a0 29: 1475-1497.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
\n

2009<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A. (2009). “New accomplishments and approaches for assessing protistan diversity and ecology in natural ecosystems.” BioScience 59<\/b>: 287-299. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A. (2009). “Protistan biogeography: why all the fuss?” Journal of Eukaryotic Microbiology 56<\/b>: 105-112. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A. and P. D. Countway (2009). “Hypotheses on the role of the protistan rare biosphere in a changing world.” Aquatic Microbial Ecology 57<\/b>: 227-238. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., P. D. Countway, et al. (2009). “Defining DNA-based operational taxonomic units for microbial eukaryote ecology.” Applied and Environmental Microbiology 75<\/b>: 5797-5808. pdf<\/a>\u00a0\u00a0\u00a0\u00a0 Download the Microbial Eukaryote Species Assignment (MESA) programs, example files & instructions here: MESA<\/a><\/b><\/em><\/td>\n<\/tr>\n
Ishikawa, F.N,\u00a0 B. Stauffer, D.A. Caron and C. Zhoua.\u00a0 2009.\u00a0 Rapid and label-free cell detection by metal-cluster-decorated carbon nanotube biosensors.\u00a0 Biosensors and Bioelectronics\u00a0 24: 2967\u20132972.<\/td>\n<\/tr>\n
Caron, D. A. and R. J. Gast (2009). Heterotrophic protists associated with sea icea. Sea Ice. D. N. Thomas and G. S. Dieckmann. Oxford, Wiley-Blackwell: <\/b>327-356.<\/td>\n<\/tr>\n
Caron, D. A., R. J. Gast, et al. (2009). “Microbial eukaryote diversity and biogeography.” Microbe 4<\/b>: 71-77. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., A. Z. Worden, et al. (2009). “Protists are microbes too: a perspective.” The ISME Journal 3<\/b>: 4-12. pdf <\/a><\/td>\n<\/tr>\n
Gast, R. J., R. W. Sanders, et al. (2009). “Ecological strategies of protists and their symbiotic relationships with prokaryotic microbes.” Trends in Microbiology 17<\/b>: 563-569. pdf<\/a><\/td>\n<\/tr>\n
Lonsdale, D. J., R. M. Cerrato, et al. (2009). “Influence of suspension-feeding bivalves on the pelagic food webs of shallow enclosed bays.” Aquatic Biology 6<\/b>: 263-279. pdf<\/a><\/td>\n<\/tr>\n
Moorthi, S. D., D. A. Caron, et al. (2009). “Mixotrophy: a widespread and important ecological strategy for planktonic and sea-ice nanoflagellates in the Ross Sea, Antarctica” Aquatic Microbial Ecology 54<\/b>: 269-277. pdf<\/a><\/td>\n<\/tr>\n
Pereira, A., H. Heidarsson, H., C. Oberg, D.A. Caron, B. Jones and G.S. Sukhatme.\u00a0 2009.\u00a0 A communication framework for cost-effective operation of AUVs in coastal regions. The 7th<\/sup> International Conference on Field and Service Robotics (FSR-2009), Cambridge, MA, July 2009.\u00a0 pdf<\/a><\/td>\n<\/tr>\n
Rose, J. M., N. M. Vora, et al. (2009). “Effects of temperature on growth rate and gross growth efficiency of an Antarctic bacterivorous protist.” The ISME Journal 3<\/b>: 252-260. pdf<\/a><\/td>\n<\/tr>\n
Sekula-Wood, E., A. Schnetzer, et al. (2009). “Rapid downward transport of the neurotoxin domoic acid in coastal waters.” Nature Geoscience 2<\/b>: 272-275. pdf<\/a><\/td>\n<\/tr>\n
Smith, R. N., Stauffer, B, et al. (2009). “Design and Implementation of Sensor Networks for the Observation and Research of Harmful Algal Blooms in Southern California Coastal Waters.” In Proceedings of the Conference on Coastal Environmental Sensing Networks, Boston, MA, Jul 2009. pdf<\/a><\/td>\n<\/tr>\n
Smith, R. N., Y. Chao, et al. (2009). “Trajectory Design for Autonomous Underwater Vehicles based on Ocean Model Predictions for Feature Tracking.” In the Proceedings of the International Conference on Field and Service Robotics, Jul 2009. pdf<\/a><\/td>\n<\/tr>\n
Smith, R. N., J. Das, et al (2009). “Implementation of an Embedded Sensor Network for the Coordination of Slocum Gliders for Coastal Monitoring and Observation.” In the Proceedings of the ACM International Workshop on UnderWater Networks, Berkeley, CA, Nov 2009. pdf<\/a><\/td>\n<\/tr>\n
Vigil, P., P. D. Countway, et al. (2009). “Rapid shifts in dominant taxa among microbial eukaryotes in estuarine ecosystems.” Aquatic Microbial Ecology 54<\/b>: 83-100. pdf<\/a><\/td>\n<\/tr>\n
\n

2008<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A. and R. J. Gast (2008). The diversity of free-living protists: seen and unseen, cultured and uncultured. Accessing uncultivated microorganisms: From the environment to organisms and genomes and back. K. Zengler. Washington, DC, ASM Press: <\/b>67-93.<\/td>\n<\/tr>\n
Caron, D. A. and J. M. Rose (2008). “The metabolic theory of ecology and algal bloom formation (Reply to comment by L\u00f3pez-Urrutia).” Limnology and Oceanography 53<\/b>: 2048-2049. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., B. A. Stauffer, et al. (2008). “Macro- to fine-scale spatial and temporal distributions and dynamics of phytoplankton and their environmental driving forces in a small subalpine lake in southern California, USA.” Limnology and Oceanography 58<\/b>: 2333-2349. pdf<\/a><\/td>\n<\/tr>\n
Rose, J. M., N. M. Vora, et al. (2008). “Effect of temperature and prey type on nutrient regeneration by an Antarctic bacterivorous protist.” Microbial Ecology 56<\/b>: 101-111. pdf<\/a><\/td>\n<\/tr>\n
Smith, J. K., D. J. Lonsdale, et al. (2008). “Feeding behavior and development of Acartia tonsa<\/em> nauplii on the brown tide alga Aureococcus anophagefferens<\/em>.”\u00a0Journal of Plankton Research 30<\/b>: 937-950. pdf<\/a><\/td>\n<\/tr>\n
Stauffer, B. A., R. A. Schaffner, et al. (2008). “Immunofluorescenceflow cytometry technique for enumeration of the brown-tide alga, Aureococcus anophagefferens<\/em>.” Applied and Environmental Microbiology 74<\/b>: 6931-6940. pdf<\/a><\/td>\n<\/tr>\n
\n

2007<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A. and A. Schnetzer (2007). Protistan community structure. Manual of environmental microbiology. C. J. Hurst, R. L. Crawford, J. L. Garlandet al. Washington, ASM Press: <\/b>454-468. pdf<\/a><\/td>\n<\/tr>\n
Caron, D.A., A. Das, A. Dhariwal, L. Golubchik, R. Govindan, D. Kempe, C. Oberg, A. Sharma, B. Stauffer, G. Sukhatme, and B. Zhang.\u00a0 2007.\u00a0 AMBROSia: An Autonomous Model-Based Reactive Observing System.\u00a0 ICCS 2007; Lecture Notes in Computer Science, 4487: 995-1001.<\/td>\n<\/tr>\n
Countway, P. D., R. J. Gast, et al. (2007). “Distinct protistan assemblages characterize the euphotic zone and deep sea (2500 m) of the western N. Atlantic (Sargasso Sea and Gulf Stream).” Environmental Microbiology 9<\/b>: 1219-1232. pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J., D. M. Moran, et al. (2007). “Kleptoplasty in an Antarctic dinoflagellate: caught in evolutionary transition?” Environmental Microbiology 9<\/b>: 39-45. pdf<\/a><\/td>\n<\/tr>\n
Lonsdale, D. J., R. M. Cerrato, et al. (2007). “Zooplankton changes associated with grazing pressure of northern quahogs (Mercenaria mercenaria<\/em> L.) in experimental mesocosms.” Estuarine and Coastal Shelf Science 73<\/b>: 101-110. pdf<\/a><\/td>\n<\/tr>\n
Moran, D. M., O. R. Anderson, et al. (2007). “A description of seven Antarctic marine Gymnamoebae including a new species and a new genus: Platyamoeba contorta<\/em> n. sp. and Vermistella antarctica<\/em> n. gen. n. sp.” Journal of Eukaryotic Microbiology 54<\/b>: 169-183. pdf<\/a><\/td>\n<\/tr>\n
Rose, J. M. and D. A. Caron (2007). “Does low temperature constrain the growth rates of heterotrophic protists? Evidence and implications for algal blooms in cold water.” Limnology and Oceanography 52<\/b>: 886-895. pdf<\/a><\/td>\n<\/tr>\n
Schnetzer, A., P. E. Miller, et al. (2007). “Blooms of Pseudo-nitzschia<\/em> and domoic acid in the San Pedro Channel and Los Angeles harbor areas of the Southern California Bight, 2003-2004.” Harmful Algae 6<\/b>: 372-387. pdf<\/a><\/td>\n<\/tr>\n
Sherr, B. F., E. B. Sherr, et al. (2007). “A sea of microbes: oceanic protists.” Oceanography 20<\/b>: 102-106. pdf<\/a><\/td>\n<\/tr>\n
Singh, A., M. Batalin, et al. (2007). “Human assisted robotic team campaigns for aquatic monitoring.” Journal of Field Robotics 24<\/b>: 969-989. pdf<\/a><\/td>\n<\/tr>\n
Sukhatme, G., A. Dhariwal, et al. (2007). “The design and development of a wireless robotic networked aquatic microbial observing system.” Environmental Engineering Science 24<\/b>: 205-215. pdf<\/a><\/td>\n<\/tr>\n
\n

2006<\/b><\/h4>\n<\/td>\n<\/tr>\n

Countway, P. D. and D. A. Caron (2006). “Abundance and distribution of Ostreococcus<\/em> sp. in the San Pedro Channel, California (USA) revealed by qPCR.” Applied and Environmental Microbiology 72<\/b>: 2496-2506. pdf<\/a><\/td>\n<\/tr>\n
Deonarine, S. N., C. J. Gobler, et al. (2006). “Role of zooplankton in the onset and demise of harmful brown tide blooms (Aureococcus anophagefferens)<\/em> in US mid-Atlantic estuares.” Aquatic Microbial Ecology 44<\/b>: 181-195. pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J., D. M. Moran, et al. (2006). “Abundance of a novel dinoflagellate phylotype in the Ross Sea, Antarctica.” Journal Of Phycology 42<\/b>: 233-242. pdf<\/a><\/td>\n<\/tr>\n
Lee, A. S., M. Mahapatro, et al. (2006). “Whole-cell sensing for a harmful bloom-forming microscopic alga by measuring antibody-antigen forces.” IEEE Transactions on Bioscience 5<\/b>: 149-156. pdf<\/a><\/td>\n<\/tr>\n
Moorthi, S. D., P. D. Countway, et al. (2006). “Use of quantitative real-time PCR to investigate the dynamics of the red tide dinoflagellate Lingulodinium polyedrum.” Microbial Ecology 52<\/b>: 136-150. pdf<\/a><\/td>\n<\/tr>\n
\n

2005<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A. (2005). “Marine microbial ecology in a molecular world: what does the future hold?” Scientia Marina 69(S)<\/b>: 97-110. pdf<\/a><\/td>\n<\/tr>\n
Countway, P. D., R. J. Gast, et al. (2005). “Protistan diversity estimates based on 18S rDNA from seawater incubations in the western North Atlantic.” Journal of Eukaryotic Microbiology 52<\/b>(2): 95-106. pdf<\/a><\/td>\n<\/tr>\n
Dolan, J. R., F. Rassoulzadegan, et al. (2005). “The first decade of \u2018Aquatic Microbial Ecology\u2019 (1995-2005): evidence for gradualism or punctuated equilibrium?” Aquatic Microbial Ecology 39<\/b>: 3-6. pdf<\/a><\/td>\n<\/tr>\n
Schnetzer, A. and D. A. Caron (2005). “Assessing the impact of copepod grazing on the trophic structure of the microbial assemblage in the San Pedro Channel, California.” Journal of Plankton Research 27<\/b>: 959-971. pdf<\/a><\/td>\n<\/tr>\n
\n

2004<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A., P. D. Countway, et al. (2004). “The growing contributions of molecular biology and immunology to protistan ecology: Molecular signatures as ecological tools.” Journal of Eukaryotic Microbiology 51<\/b>(1): 38-48. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., C. J. Gobler, et al. (2004). “Microbial herbivory on the brown tide alga, Aureococcus anophagefferens: results from natural ecosystems, mesocosms and laboratory experiments.” Harmful Algae 3<\/b>(4): 439-457. pdf<\/a><\/td>\n<\/tr>\n
Cerrato, R. M., D. A. Caron, et al. (2004). “Effect of the northern quahog Mercenaria mercenaria<\/em> on the development of blooms of the brown tide alga Aureococcus anophagefferens<\/em>.” Marine Ecology Progress Series 281<\/b>: 93-108. pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J., M. R. Dennett, et al. (2004). “Characterization of protistan assemblages in the Ross Sea, Antarctica by denaturing gradient gel electrophoresis.” Applied and Environmental Microbiology 70<\/b>: 2028-2037. pdf<\/a><\/td>\n<\/tr>\n
Gastrich, M. D., R. Lathrop, et al. (2004). “Assessment of brown tide blooms, caused by Aureococcus anophagefferens<\/em>, and contributing factors in New Jersey coastal bays: 2000-2002.” Harmful Algae 3<\/b>: 305-320. pdf<\/a><\/td>\n<\/tr>\n
Gobler, C. J., G. E. Boneillo, et al. (2004). “Nutrient limitation, organic matter cycling, and plankton dynamics during an Aureococcus anophagefferens<\/em> bloom.” Aquatic Microbial Ecology 35<\/b>: 31-43. pdf<\/a><\/td>\n<\/tr>\n
Rose, J. M., D. A. Caron, et al. (2004). “Counting heterotrophic nanoplanktonic protists in cultures and in aquatic communities by flow cytometry.” Aquatic Microbial Ecology 34<\/b>: 263-277. pdf<\/a><\/td>\n<\/tr>\n
\n

2003<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A., M. R. Dennett, et al. (2003). “Development and application of a monoclonal-antibody technique for counting Aureococcus anophagefferens<\/em>, an alga causing recurrent brown tides in the Mid-Atlantic United States.” Applied and Environmental Microbiology 69<\/b>(9): 5492-5502. pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J., D. J. Beaudoin, et al. (2003). “Isolation of symbiotically expressed genes from the dinoflagellate symbiont of the solitary radiolarian Thalassicolla nucleata<\/em> ” Biological Bulletin 204<\/b>: 210-214. pdf<\/a><\/td>\n<\/tr>\n
Smith, W. O., Jr., M. R. Dennett, et al. (2003). “The temporal dynamics of the flagellated and colonial stages of Phaeocystis antarctica in the Ross Sea.” Deep-Sea Research 50<\/b>: 605-617. pdf<\/a><\/td>\n<\/tr>\n
\n

2002<\/b><\/h4>\n<\/td>\n<\/tr>\n

Caron, D. A., P. D. Countway, et al. (2002). Protozoa in marine\/estuarine waters. Encyclopedia of environmental microbiology. G. Bitton. New York, John Wiley & Sons, Inc.: <\/b>2613-2626. pdf<\/td>\n<\/tr>\n
Dennett, M. R., D. A. Caron, et al. (2002). “Video plankton recorder reveals high abundances of colonial Radiolaria in surface waters of the central North Pacific.” Journal of Plankton Research 24<\/b>(8): 797-805. pdf<\/a><\/td>\n<\/tr>\n
\n

2001<\/b><\/h4>\n<\/td>\n<\/tr>\n

Boissonneault-Cellineri, K. R., M. Mehta, et al. (2001). “Microbial food web interactions in two Long Island embayments.” Aquatic Microbial Ecology 26<\/b>(2): 139-155. pdf<\/a><\/td>\n<\/tr>\n
Carlsson, P. and D. A. Caron (2001). “Seasonal variation of phosphorus limitation of bacterial growth in a small lake.” Limnology and Oceanography 46<\/b>(1): 108-120.\u00a0pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A. (2001). Protistan community structure. Manual of Environmental Microbiology. C. J. Hurst, G. R. Knudsen, M. J. McInerney, L. D. Stetzenbach and M. V. Walter. Washington, DC, ASM Press: <\/b>378-389. pdf<\/td>\n<\/tr>\n
Dennett, M. R., S. Mathot, et al. (2001). “Abundance and distribution of phototrophic and heterotrophic nano- and microplankton in the southern Ross Sea.” Deep-Sea Research Part II-Topical Studies in Oceanography 48<\/b>(19-20): 4019-4037. pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J. and D. A. Caron (2001). “Photosymbiotic associations in planktonic foraminifera and radiolaria.” Hydrobiologia 461<\/b>: 1-7. pdf<\/a><\/td>\n<\/tr>\n
Lim, E. L., M. R. Dennett, et al. (2001). “Identification of heterotrophic nanoflagellates by restriction fragment length polymorphism analysis of small subunit ribosomal DNA.” Journal of Eukaryotic Microbiology 48<\/b>(3): 247-257. pdf<\/a><\/td>\n<\/tr>\n
Sanders, R. W., D. A. Caron, et al. (2001). “Nutrient acquisition and population growth of a mixotrophic alga in axenic and bacterized cultures.” Microbial Ecology 42<\/b>(4): 513-523. pdf<\/a><\/td>\n<\/tr>\n
\n

2000<\/b><\/h4>\n<\/td>\n<\/tr>\n

Amaral Zettler, L. A. and D. A. Caron (2000). “New insights into the phylogeny of the Acantharea based on SSU rRNA gene sequencing.” European Journal Of Protistology 36<\/b>(1): 34-39. pdf<\/td>\n<\/tr>\n
Caron, D. A., M. R. Dennett, et al. (2000). “Microzooplankton herbivory in the Ross Sea, Antarctica.” Deep-Sea Research 47<\/b>: 15-16. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A. (2000). Protistan herbivory and bacterivory. Marine Microbiology: Methods in Microbiology. J. Paul. San Diego, ACADEMIC PRESS INC. 30: <\/b>289-315. pdf<\/td>\n<\/tr>\n
Caron, D. A. (2000). Symbiosis and mixotrophy among pelagic microorganisms. Microbial Ecology of the Oceans. D. L. Kirchman. New York, Wiley-Liss, Inc.: <\/b>495-523. pdf<\/td>\n<\/tr>\n
Caron, D. A., E. L. Lim, et al. (2000). “Responses of bacterioplankton and phytoplankton to organic carbon and inorganic nutrient additions in contrasting oceanic ecosystems.” Aquatic Microbial Ecology 22<\/b>(2): 175-184. pdf<\/a><\/td>\n<\/tr>\n
Garrison, D. L., M. M. Gowing, et al. (2000). “Microbial food web structure in the Arabian Sea: a US JGOFS study.” Deep-Sea Research Part Ii-Topical Studies in Oceanography 47<\/b>(7-8): 1387-1422. pdf<\/a><\/td>\n<\/tr>\n
Lonsdale, D. J., D. A. Caron, et al. (2000). “Predation by Oithona<\/em> spp. on protozooplankton in the Ross Sea, Antarctica.” Deep-Sea Research II 47<\/b>(15-16): 3273-3283. pdf<\/a><\/td>\n<\/tr>\n
Nigam, R. and D. A. Caron (2000). “Does temperature affect dimorphic reproduction in benthic foraminifera? A culture experiment on Rosalina leei<\/em>.” Current Science 79<\/b>(8): 1105-1106. pdf<\/a><\/td>\n<\/tr>\n
Sanders, R. W., U.-G. Berninger, et al. (2000). “Heterotrophic and mixotrophic nanoplankton predation on picoplankton in the Sargasso Sea and on Georges Bank.” Marine Ecology Progress Series 192<\/b>: 103-118. pdf<\/a><\/td>\n<\/tr>\n
\n

1999<\/b><\/h4>\n<\/td>\n<\/tr>\n

Amaral Zettler, L. A., O. R. Anderson, et al. (1999). “Towards a molecular phylogeny of colonial spumellarian radiolaria.” Marine Micropaleontology 36<\/b>: 67-79. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A. and M. R. Dennett (1999). “Phytoplankton growth and mortality during the 1995 Northeast Monsoon and Spring Intermonsoon in the Arabian Sea.” Deep-Sea Research 46<\/b>: 1665-1690. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., E. L. Lim, et al. (1999). “Molecular phylogenetic analysis of the heterotrophic chrysophyte genus Paraphysomonas<\/em> (chrysophyceae), and the design of rRNA-targeted oligonucleotide probes for two species.” Journal of Phycology 35<\/b>: 824-837. pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., R. J. Gast, et al. (1999). “Protistan community structure: molecular approaches for answering ecological questions.” Hydrobiologia 401<\/b>: 215-227.\u00a0pdf<\/a><\/td>\n<\/tr>\n
Caron, D. A., E. R. Peele, et al. (1999). “Picoplankton and nanoplankton and their trophic coupling in surface waters of the Sargasso Sea south of Bermuda.” Limnology and Oceanography 44<\/b>(2): 259-272. pdf<\/a><\/td>\n<\/tr>\n
Dennett, M. R., D. A. Caron, et al. (1999). “Abundance and biomass of nano- and microplankton during the 1995 Northeast Monsoon and Spring Intermonsoon in the Arabian Sea.” Deep-Sea Research 46<\/b>: 1691-1717.\u00a0pdf<\/a><\/td>\n<\/tr>\n
Gast, R. J., T. A. McDonnell, et al. (1999). “srDNA-based taxonomic affinities of algal symbionts from a planktonic foraminifer and a solitary radiolarian.” Journal Of Phycology 36<\/b>: 172-177. pdf<\/a><\/td>\n<\/tr>\n
Gifford, D. J. and D. A. Caron (1999). Sampling, preservation, enumeration and biomass of marine protozooplankton. ICES zooplankton methodology manual. London, Academic Press: <\/b>193-221. pdf<\/td>\n<\/tr>\n
Lim, E. L., D. A. Caron, et al. (1999). “The ecology of Paraphysomonas imperforata<\/em> based on studies employing oligonucleotide probe identification in coastal water samples and enrichment culture.” Limnology and Oceanography 44<\/b>: 37-51. pdf<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/b><\/p>\n

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